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Protein

U6 snRNA-associated Sm-like protein LSm2

Gene

LSM2

Organism
Macaca mulatta (Rhesus macaque)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Binds specifically to the 3'-terminal U-tract of U6 snRNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinUniRule annotationSAAS annotation, RNA-bindingUniRule annotation
Biological processmRNA processing, mRNA splicing

Names & Taxonomyi

Protein namesi
Recommended name:
U6 snRNA-associated Sm-like protein LSm2UniRule annotation
Gene namesi
Name:LSM2Imported
ORF Names:EGK_14728Imported
OrganismiMacaca mulatta (Rhesus macaque)Imported
Taxonomic identifieri9544 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniCercopithecidaeCercopithecinaeMacaca
Proteomesi
  • UP000006718 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation, SpliceosomeUniRule annotation

Expressioni

Gene expression databases

ExpressionAtlasiG7MRK5 baseline

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

SMRiG7MRK5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 72SmInterPro annotationAdd BLAST68

Sequence similaritiesi

Belongs to the snRNP Sm proteins family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3448 Eukaryota
COG1958 LUCA
GeneTreeiENSGT00390000016597
KOiK12621

Family and domain databases

CDDicd01725 LSm2, 1 hit
InterProiView protein in InterPro
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
IPR016654 U6_snRNA_Lsm2
PANTHERiPTHR13829 PTHR13829, 1 hit
PfamiView protein in Pfam
PF01423 LSM, 1 hit
PIRSFiPIRSF016394 U6_snRNA_Lsm2, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit

Sequencei

Sequence statusi: Complete.

G7MRK5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLFYSFFKSL VGKDVVVELK NDLSICGTLH SVDQYLNIKL TDISVTDPEK
60 70 80 90
YPHMLSVKNC FIRGSVVRYV QLPADEVDTQ LLQDAARKEA LQQKQ
Length:95
Mass (Da):10,835
Last modified:January 25, 2012 - v1
Checksum:i623591A09A6ABACE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JSUE03030631 Genomic DNA No translation available.
JU320755 mRNA Translation: AFE64511.1
JU472045 mRNA Translation: AFH28849.1
JV045316 mRNA Translation: AFI35387.1
CM001256 Genomic DNA Translation: EHH18178.1
RefSeqiNP_001247614.1, NM_001260685.1
UniGeneiMmu.21742

Genome annotation databases

EnsembliENSMMUT00000062838; ENSMMUP00000043635; ENSMMUG00000006832
GeneIDi715592
KEGGimcc:715592

Similar proteinsi

Entry informationi

Entry nameiG7MRK5_MACMU
AccessioniPrimary (citable) accession number: G7MRK5
Entry historyiIntegrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: January 25, 2012
Last modified: May 23, 2018
This is version 46 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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