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Entry version 57 (11 Dec 2019)
Sequence version 2 (01 Oct 2014)
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Protein
Submitted name:

Lysine-specific demethylase ELF6-like protein, putative

Gene

11420302

Organism
Medicago truncatula (Barrel medic) (Medicago tribuloides)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionMethyltransferaseImported, OxidoreductaseImported, Transferase
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Lysine-specific demethylase ELF6-like protein, putativeImported
Submitted name:
Putative [histone H3]-lysine-36 demethylaseImported (EC:1.14.11.27Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:11420302Imported
Ordered Locus Names:MTR_1g094740Imported
ORF Names:MtrunA17_Chr1g0199511Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMedicago truncatula (Barrel medic) (Medicago tribuloides)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3880 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideae50 kb inversion cladeNPAAA cladeHologaleginaIRL cladeTrifolieaeMedicago
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000265566 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1
  • UP000002051 Componenti: Chromosome 1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3880.AES62124

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini16 – 57JmjNInterPro annotationAdd BLAST42
Domaini291 – 460JmjCInterPro annotationAdd BLAST170
Domaini1389 – 1418C2H2-typeInterPro annotationAdd BLAST30
Domaini1419 – 1448C2H2-typeInterPro annotationAdd BLAST30
Domaini1449 – 1480C2H2-typeInterPro annotationAdd BLAST32

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni72 – 100DisorderedSequence analysisAdd BLAST29
Regioni201 – 249DisorderedSequence analysisAdd BLAST49
Regioni826 – 857DisorderedSequence analysisAdd BLAST32
Regioni1317 – 1364DisorderedSequence analysisAdd BLAST48

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1052 – 1072Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi84 – 100PolarSequence analysisAdd BLAST17
Compositional biasi230 – 249PolarSequence analysisAdd BLAST20
Compositional biasi836 – 857PolyampholyteSequence analysisAdd BLAST22
Compositional biasi1333 – 1364PolyampholyteSequence analysisAdd BLAST32

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
664180at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003347 JmjC_dom
IPR003349 JmjN
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02373 JmjC, 1 hit
PF02375 JmjN, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00558 JmjC, 1 hit
SM00545 JmjN, 1 hit
SM00355 ZnF_C2H2, 4 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57667 SSF57667, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51184 JMJC, 1 hit
PS51183 JMJN, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G7I511-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGNVEIPNWL EGLPLAPEFR PTDTEFSDPI AYISKIEQKA GKFGICKIIP
60 70 80 90 100
PLPKPSKKYV FSNLNKSLLK RPELGPDGSS LGAGNSWKMG SGDSGNDGES
110 120 130 140 150
RALFTTRQQE VGQNVKKSKG VVQKSMACVH KQVWQSGEVY TIEQFESKSK
160 170 180 190 200
TFSRSVLGTA KDVSPLVVES MFWKAASEKP IYVEYANDVP GSAFGESQGQ
210 220 230 240 250
FYRSHRRQRK RTDYKSRVDS SVCKETEMGG VNDTHNNESN GIASPSHAES
260 270 280 290 300
CLETSKSAMT LSTSTPNEVS QPSKEMISDA DNDMQGTAGW KLSNSPWNLQ
310 320 330 340 350
VIPRASGSLT RFMPDDIPGV TSPMIYIGML FSWFAWHVED HELHSLNFLH
360 370 380 390 400
TGSSKTWYSI PGNYAFAFEE VIRTEGYGGD VDQLAALKLL GEKTTLLSPE
410 420 430 440 450
VVVASGIPCC RLVQNPGEFV VTFPRAYHVG FSHGFNCGEA ANFGTPQWLG
460 470 480 490 500
IAKEAAVRRA TMNHLPMLSH QQLLYLLTMS FISSVPRTLL PGVRSSRLRD
510 520 530 540 550
RQKEEREILV KQAFIEDMLH ENKLLSILLG KEATKEVVLW NVDLLPDSGK
560 570 580 590 600
YRQLPDLAST SGTYMADMSN DNISSADKSS HCLLDEMSLY MENLTDSDVG
610 620 630 640 650
YDDLPCHFQT DSGALVCVGC GILGFPFMTL IQPTEKLIME LPDNHLVEDS
660 670 680 690 700
SLNSVGSFHS AVSRDLSVSE LACAKYSPDQ SLNECNKCWN TSSTFLKPRI
710 720 730 740 750
FCLEHAVQVV EMLQSKGGAN VLIICHSDYP KIKAHARAVA EEIQGDFDYN
760 770 780 790 800
EVPMDIASPE NLALIDLAID GKELDECEDW TSKLGLNLRF CVNNINKSPC
810 820 830 840 850
KQVPFTLALG MQFYDKRPGL SLNWHSQKAR SKRSNRLAQS KPDDIQRKKD
860 870 880 890 900
DQLQERIDGS TAEKKLLQYS RRKFKPKQSC FSVAITVCEC ESHEKSKNVS
910 920 930 940 950
AVLSAEHYKC VSKDELDTDN FRSDCALSRG SASAAMSPLH NEIQNAEAPT
960 970 980 990 1000
SMSLNTSVSE KCSKENQNCQ NNKYSGSLSN GIDKNVDVFG NNQITEAIAI
1010 1020 1030 1040 1050
GSKCDSLDLV GEGYQEQQSA CKSNSEAVLS TASLVNQTAL ATVDGSFESP
1060 1070 1080 1090 1100
INNQAEERVS NSMSLKETIE RESKSLNEMD KEPLNDDKEI SEHAPTADIC
1110 1120 1130 1140 1150
EVPRELYASA NFHNTVDLDA MQQERQVGES GEQEIIQSTH ISAKQLYEST
1160 1170 1180 1190 1200
SGEYAEGLHN EVILESSKQC QIQNENITIE EHVSNYVAKG DNRSITISEI
1210 1220 1230 1240 1250
SCSDVSAETC PEKDSCIQFV SNTEKEMEIQ PIHRVDEELS ISIQECSQTE
1260 1270 1280 1290 1300
KKTCGRENVN GSEVDLSQDD GELESCELTT EVPRSNAGKK KRRKMEDTEN
1310 1320 1330 1340 1350
NQFDCYDFIR SPCERLRPRT GKTATGKSVG DNSQNDEENR VAKRTRKPAE
1360 1370 1380 1390 1400
ASIPRKDKKS NVKRPHKCDL DNCRMSFTTK AELQLHKRNL CPHEGCGKKF
1410 1420 1430 1440 1450
SSHKYALIHQ RVHEDDRPFK CTWKGCSMSF KWSWARTEHL RVHTGEKPYQ
1460 1470 1480
CKVEGCGLSF RFISDFSRHR RKTGHCVKSP A
Length:1,481
Mass (Da):165,007
Last modified:October 1, 2014 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1B2984C0D05F8331
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM001217 Genomic DNA Translation: AES62124.2
PSQE01000001 Genomic DNA Translation: RHN81473.1

NCBI Reference Sequences

More...
RefSeqi
XP_003591873.2, XM_003591825.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AES62124; AES62124; MTR_1g094740

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
11420302

Gramene; a comparative resource for plants

More...
Gramenei
AES62124; AES62124; MTR_1g094740

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mtr:MTR_1g094740

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM001217 Genomic DNA Translation: AES62124.2
PSQE01000001 Genomic DNA Translation: RHN81473.1
RefSeqiXP_003591873.2, XM_003591825.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3880.AES62124

Genome annotation databases

EnsemblPlantsiAES62124; AES62124; MTR_1g094740
GeneIDi11420302
GrameneiAES62124; AES62124; MTR_1g094740
KEGGimtr:MTR_1g094740

Phylogenomic databases

OrthoDBi664180at2759

Family and domain databases

InterProiView protein in InterPro
IPR003347 JmjC_dom
IPR003349 JmjN
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02373 JmjC, 1 hit
PF02375 JmjN, 1 hit
SMARTiView protein in SMART
SM00558 JmjC, 1 hit
SM00545 JmjN, 1 hit
SM00355 ZnF_C2H2, 4 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS51184 JMJC, 1 hit
PS51183 JMJN, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG7I511_MEDTR
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G7I511
Secondary accession number(s): A0A0C3USN6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 25, 2012
Last sequence update: October 1, 2014
Last modified: December 11, 2019
This is version 57 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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