Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 77 (10 Apr 2019)
Sequence version 1 (14 Dec 2011)
Previous versions | rss
Other tutorials and videosHelp videoFeedback
Protein
Submitted name:

SWI/SNF nucleosome remodeling complex component

Gene

swsn-4

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-CEL-3214858 RMTs methylate histone arginines

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
SWI/SNF nucleosome remodeling complex componentImported
Submitted name:
SWI2/SNF2-like proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:swsn-4Imported
Synonyms:psa-4Imported
ORF Names:CELE_F01G4.1Imported, F01G4.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegansImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome IV

Organism-specific databases

WormBase

More...
WormBasei
F01G4.1 ; CE05553 ; WBGene00004204 ; swsn-4

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
WBGene00004204 Expressed in 5 organ(s), highest expression level in multi-cellular organism

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-1030 BAF chromatin remodeling complex
CPX-1031 PBAF chromatin remodeling complex

STRING: functional protein association networks

More...
STRINGi
6239.F01G4.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini86 – 121QLQInterPro annotationAdd BLAST36
Domaini272 – 344HSAInterPro annotationAdd BLAST73
Domaini545 – 710Helicase ATP-bindingInterPro annotationAdd BLAST166
Domaini854 – 1005Helicase C-terminalInterPro annotationAdd BLAST152
Domaini1200 – 1270BromoInterPro annotationAdd BLAST71

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili30 – 50Sequence analysisAdd BLAST21
Coiled coili320 – 345Sequence analysisAdd BLAST26
Coiled coili481 – 505Sequence analysisAdd BLAST25
Coiled coili1127 – 1154Sequence analysisAdd BLAST28
Coiled coili1245 – 1265Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

BromodomainPROSITE-ProRule annotationSAAS annotation, Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0386 Eukaryota
COG0553 LUCA
COG5076 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000169728

KEGG Orthology (KO)

More...
KOi
K11647

Identification of Orthologs from Complete Genome Data

More...
OMAi
HHFNIEK

Database of Orthologous Groups

More...
OrthoDBi
685477at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00079 HELICc, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.920.10, 1 hit
2.20.28.130, 1 hit
3.40.50.10810, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006576 BRK_domain
IPR037259 BRK_sf
IPR001487 Bromodomain
IPR036427 Bromodomain-like_sf
IPR018359 Bromodomain_CS
IPR014978 Gln-Leu-Gln_QLQ
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR014012 HSA_dom
IPR027417 P-loop_NTPase
IPR029295 SnAC
IPR038718 SNF2-like_sf
IPR000330 SNF2_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF07533 BRK, 1 hit
PF00439 Bromodomain, 1 hit
PF00271 Helicase_C, 1 hit
PF07529 HSA, 1 hit
PF08880 QLQ, 1 hit
PF14619 SnAC, 1 hit
PF00176 SNF2_N, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00503 BROMODOMAIN

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00592 BRK, 1 hit
SM00297 BROMO, 1 hit
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00573 HSA, 1 hit
SM00951 QLQ, 1 hit
SM01314 SnAC, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF160481 SSF160481, 1 hit
SSF47370 SSF47370, 1 hit
SSF52540 SSF52540, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00633 BROMODOMAIN_1, 1 hit
PS50014 BROMODOMAIN_2, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51204 HSA, 1 hit
PS51666 QLQ, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G5EF53-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGRPAFEQF TAQPPQPAGE VVAQQAGDGA QGQELTISKL ENAITSMEEQ
60 70 80 90 100
GLQNDHRHAK AVLLKQKLQS GLPDAVPGQE NGGNQQITPA QLNQLRAQVS
110 120 130 140 150
AYRLLARNEQ VPANLIADAV MLRPKVTTLL PEPYEYPGEA ENGEKLPYDL
160 170 180 190 200
MKIFNLHQIR CNRPTTISVP SGIDPVGMLK QRENMIQNRI GLRMKLLNNL
210 220 230 240 250
PADIPDHMKL KAEIELRALR LVNLQTQVRS EVMACLKRDT TLETALNPYA
260 270 280 290 300
YRRTKRQSLR EARVTEKLEK QQKMEQERKR RQKHTDLMQA IIQHGKEFKE
310 320 330 340 350
YHRNNLLKMA KSRKAVMTYH QNNERERKKD EIRNEKLRMQ KLMQEDEEGY
360 370 380 390 400
RALLDEKKDQ RLVYLLQQTD EYVDSLCSLV RQHQNTEKKK KKEDKKIEKG
410 420 430 440 450
NQMDEEARVH VRERSTGKAL TGDQAPKTEE IEFWLETHPE YEIVPRDQLS
460 470 480 490 500
DDEEEEEEEA PVEPEEEKDD QYAGMDEETK AKMILEKARN EEDEYDQKTK
510 520 530 540 550
KQMADYYATA HKIKEKVVKQ HTTMGGGDPN LLLKPYQIKG LEWMVSLYNN
560 570 580 590 600
NLNGILADEM GLGKTIQTIS LVTYLMEVKQ NNGPYLVIVP LSTLSNWQNE
610 620 630 640 650
FAKWAPSVTT IIYKGTKDAR RRVEGQIRKG AFNVLMTTYE YVIKEKALLG
660 670 680 690 700
KIRWKYMIID EGHRLKNHNC KLTLMLNGFF HAQHRLLLTG TPLQNKLPEL
710 720 730 740 750
WALLNFLLPS IFSSCGTFEQ WFNAPFATTG EKVELNQEET MLIIRRLHKV
760 770 780 790 800
LRPFLLRRLK KEVESQLPDK TEYVIKCDQS ALQKVIYRHM QKGLLLDAKM
810 820 830 840 850
SSGARSLMNT VVHLRKLCNH PFLFPNIEDS CRAYWKVNEV NGTDLMRVAG
860 870 880 890 900
KLELLDRILP KLKATGHRIL MFFQMTSMMN IFEDFLNFRR YTYLRLDGST
910 920 930 940 950
KPDERGDLLT QFNAPNSDLF LFMLSTRAGG LGLNLQTADT VIIFDSDWNP
960 970 980 990 1000
HQDMQAQDRA HRIGQKKEVR VLRLITANSV EEKILAAARY KLNVDEKVIQ
1010 1020 1030 1040 1050
AGKFDQRSTG AERKQMLEQI IQADGEEEEE EEVPDDETVN QMVARSEEEF
1060 1070 1080 1090 1100
NIFQSMDIDR RREEANQLHR KPRLLEEHEI PDDILKLSFD YEEMERAREE
1110 1120 1130 1140 1150
GREVVDQTPN QRRRRREVDY SSDLLSDEQF MKQVEEVEDE NNQAVAERKK
1160 1170 1180 1190 1200
QRKRKMAGLD ENDDSMDDVV LQHKKKKTDP ELAEKINEML DVILEYKNED
1210 1220 1230 1240 1250
GELIADVFQT LPTRKELPDY YQVISKPMDF DRINKKIETG RYTVMEELND
1260 1270 1280 1290 1300
DMNLLVNNAQ TYNEEGSEIY VSSETIGKLW KEQYDKFMNP PKPVEEPVKK
1310 1320 1330 1340 1350
KEPSTPSTSS SRPSTSGTPS VSDLQRTQQA TAQQMLMLMT HMQSLPPAQA
1360 1370 1380 1390 1400
QQFQQALMTQ TGGNQALMLQ YMQSAMLAQR AQASTKVTPK KDEKKETSSS
1410 1420 1430 1440 1450
VKTEEAKKDD EPSTSSASAP PPKKKKESED SEDPMEEDEE EEIIGQKKEP
1460 1470
ASSRRKSRPT RRFSNEDEEE EDDE
Length:1,474
Mass (Da):170,612
Last modified:December 14, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAEB80E0926E09D5E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AF230280 mRNA Translation: AAG16655.1
BX284604 Genomic DNA Translation: CAA92768.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T20488

NCBI Reference Sequences

More...
RefSeqi
NP_502082.1, NM_069681.5

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Cel.23435

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
F01G4.1; F01G4.1; WBGene00004204

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
178015

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cel:CELE_F01G4.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF230280 mRNA Translation: AAG16655.1
BX284604 Genomic DNA Translation: CAA92768.1
PIRiT20488
RefSeqiNP_502082.1, NM_069681.5
UniGeneiCel.23435

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

ComplexPortaliCPX-1030 BAF chromatin remodeling complex
CPX-1031 PBAF chromatin remodeling complex
STRINGi6239.F01G4.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF01G4.1; F01G4.1; WBGene00004204
GeneIDi178015
KEGGicel:CELE_F01G4.1

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
178015
WormBaseiF01G4.1 ; CE05553 ; WBGene00004204 ; swsn-4

Phylogenomic databases

eggNOGiKOG0386 Eukaryota
COG0553 LUCA
COG5076 LUCA
GeneTreeiENSGT00940000169728
KOiK11647
OMAiHHFNIEK
OrthoDBi685477at2759

Enzyme and pathway databases

ReactomeiR-CEL-3214858 RMTs methylate histone arginines

Gene expression databases

BgeeiWBGene00004204 Expressed in 5 organ(s), highest expression level in multi-cellular organism

Family and domain databases

CDDicd00079 HELICc, 1 hit
Gene3Di1.20.920.10, 1 hit
2.20.28.130, 1 hit
3.40.50.10810, 1 hit
InterProiView protein in InterPro
IPR006576 BRK_domain
IPR037259 BRK_sf
IPR001487 Bromodomain
IPR036427 Bromodomain-like_sf
IPR018359 Bromodomain_CS
IPR014978 Gln-Leu-Gln_QLQ
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR014012 HSA_dom
IPR027417 P-loop_NTPase
IPR029295 SnAC
IPR038718 SNF2-like_sf
IPR000330 SNF2_N
PfamiView protein in Pfam
PF07533 BRK, 1 hit
PF00439 Bromodomain, 1 hit
PF00271 Helicase_C, 1 hit
PF07529 HSA, 1 hit
PF08880 QLQ, 1 hit
PF14619 SnAC, 1 hit
PF00176 SNF2_N, 1 hit
PRINTSiPR00503 BROMODOMAIN
SMARTiView protein in SMART
SM00592 BRK, 1 hit
SM00297 BROMO, 1 hit
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00573 HSA, 1 hit
SM00951 QLQ, 1 hit
SM01314 SnAC, 1 hit
SUPFAMiSSF160481 SSF160481, 1 hit
SSF47370 SSF47370, 1 hit
SSF52540 SSF52540, 2 hits
PROSITEiView protein in PROSITE
PS00633 BROMODOMAIN_1, 1 hit
PS50014 BROMODOMAIN_2, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51204 HSA, 1 hit
PS51666 QLQ, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG5EF53_CAEEL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G5EF53
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: April 10, 2019
This is version 77 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again