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UniProtKB - G4QD62 (G4QD62_TAYAM)

Entry version 27 (11 Dec 2019)
Sequence version 1 (14 Dec 2011)
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Protein
Submitted name:

IcmF-related protein

Gene

TASI_0088

Organism
Taylorella asinigenitalis (strain MCE3)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
IcmF-related proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:TASI_0088Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTaylorella asinigenitalis (strain MCE3)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1008459 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Taylorella ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009284 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		1008459.TASI_0088

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini160 – 422ImcF-related_NInterPro annotationAdd BLAST263
Domaini474 – 780IcmF-relatedInterPro annotationAdd BLAST307
Domaini905 – 1101IcmF_CInterPro annotationAdd BLAST197

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105CU3 Bacteria
COG3523 LUCA

KEGG Orthology (KO)

More...KOi		K11891

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009612 IcmF-related
IPR025743 IcmF-related_N_dom
IPR010623 IcmF_C
IPR027417 P-loop_NTPase
IPR017731 T6SS_IcmF

Pfam protein domain database

More...Pfami		View protein in Pfam
PF06761 IcmF-related, 1 hit
PF06744 IcmF_C, 1 hit
PF14331 ImcF-related_N, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR03348 VI_IcmF, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G4QD62-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYLIIAIFAL YFLRLFWRKY REGRLNAKLL GQLKSNKPKD TEKLTEKERE 
        60         70         80         90        100
EVRVLSERFN EAITLLKQSR FEKGKDKSFS ARFSKQYLYQ LPWYVFIGAP 
       110        120        130        140        150
GSGKTTALVN SGLNFPLAEK FGRMALKGVG GTRNCDWWFT DEAVLLDTAG 
       160        170        180        190        200
RYTTQDSNAA TDEDEWKGFL KLLTKYRARQ PINGVMLTVS VYDLLASTQE 
       210        220        230        240        250
ERAKHAVALK KRLQELRDEL GTEFPVYILV TKMDQLHGFE DYFDNLSVEE 
       260        270        280        290        300
HQQVWGFTFP YEESQKDGFD FYEEYEKEFQ VLQERLFDGL PDLLMKNRNL 
       310        320        330        340        350
ESSSLAYLLP QQFANLRIVL GTFLTDVFSF SRLESKIVPR GVYFTSGTQG 
       360        370        380        390        400
GVSFDKVSEE LKDYLQIDGI SQHNKAPMLE GGKSYFLTDL LQNLIFKESG 
       410        420        430        440        450
LAGVNLKWEK RYRQIQWIGY GLVGLLLLGA LTLWFNSYRN NSRYLDFVEE 
       460        470        480        490        500
KLPVVQNHSN NIKISESGDV FSILPYLSLV KKLPNGENFL VDDAPFSYGF 
       510        520        530        540        550
GLYQGGKVKS ASRSIYDDAI HQVFAPQIAK RIEKRLATMS DANIVIYYEA 
       560        570        580        590        600
LRAYLMMYEP EHYDKDYFTQ WVLHDVVADK SAQFNNEQFQ LLREHMDYLF 
       610        620        630        640        650
GQGAFVSPFP LNEELVQEAR NRIDSHDLAQ RAYLRAREIL KQDPKNDVTL 
       660        670        680        690        700
MTLAGNQAST VFRRKSGDAL NRGVNRIFSY EGYWNIFNKN IEKISIQLRE 
       710        720        730        740        750
DDEWILGIDN TTFADGSANK LLNEVKKLYF VDYIREWDAF LADIEVIPPK 
       760        770        780        790        800
NLSHAIELSR SMSSTNSPLT KFVKGVAGDT TLLREDVNFQ RTLVDRATES 
       810        820        830        840        850
ASSMASSLTS LMGPLDTGDL IKGKEEPTKL ESMVDNHFIG YHELAVSAGN 
       860        870        880        890        900
NTPAPIEGTI DLIEELYNFL TASETALRTK VTLPSQEVIS KLQAESGRLP 
       910        920        930        940        950
PVVGSMLTSI TTEASKAINS GAQANIGADI NAQIGMSCRN SITNRYPFRS 
       960        970        980        990       1000
TTRDVAPNDF ARFFAPNGLM DQFFNKNLIN MVDMSKRPWR FKPGVDGSKG 
      1010       1020       1030       1040       1050
NIAKYLSSFE KASVIRDVYF AGGKPEPSFK VSIRPVEMDA NITQMVLNID 
      1060       1070       1080       1090       1100
GQTLTYEHGP QVGKSFDWPG QGSNQVSITL SPHDGTSSLT TNGPWALNRL 
      1110       1120       1130       1140       1150
IDNAKISRGR SPEVIFATFN IGGRSVKLEI TANSAKSPFR LGEMRSFVCP 

GVN
Length:1,153
Mass (Da):130,556
Last modified:December 14, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1445F0ABD485A9D4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP003059 Genomic DNA Translation: AEP35879.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AEP35879; AEP35879; TASI_0088

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		tas:TASI_0088

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003059 Genomic DNA Translation: AEP35879.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi1008459.TASI_0088

Genome annotation databases

EnsemblBacteriaiAEP35879; AEP35879; TASI_0088
KEGGitas:TASI_0088

Phylogenomic databases

eggNOGiENOG4105CU3 Bacteria
COG3523 LUCA
KOiK11891

Family and domain databases

InterProiView protein in InterPro
IPR009612 IcmF-related
IPR025743 IcmF-related_N_dom
IPR010623 IcmF_C
IPR027417 P-loop_NTPase
IPR017731 T6SS_IcmF
PfamiView protein in Pfam
PF06761 IcmF-related, 1 hit
PF06744 IcmF_C, 1 hit
PF14331 ImcF-related_N, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR03348 VI_IcmF, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG4QD62_TAYAM
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G4QD62
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 14, 2011
Last sequence update: December 14, 2011
Last modified: December 11, 2019
This is version 27 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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