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Protein
Submitted name:

Uncharacterized protein

Gene

SOX5

Organism
Sarcophilus harrisii (Tasmanian devil) (Sarcophilus laniarius)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi170 – 238HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SOX5Imported
OrganismiSarcophilus harrisii (Tasmanian devil) (Sarcophilus laniarius)Imported
Taxonomic identifieri9305 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaMetatheriaDasyuromorphiaDasyuridaeSarcophilus
Proteomesi
  • UP000007648 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Interactioni

Protein-protein interaction databases

STRINGi9305.ENSSHAP00000001639

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini170 – 238HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili67 – 94Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0528 Eukaryota
ENOG410YZNG LUCA
GeneTreeiENSGT00760000119274
InParanoidiG3VEN5
OMAiMRQYFSV
OrthoDBiEOG091G03C6
TreeFamiTF320471

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

G3VEN5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
FQDEVAQPLN LSAKPKTSDG KSPTSPTSPH MPALRINSGA SSLKASVPAA
60 70 80 90 100
LASPSARVST IGYLNDHDAV TKAIQEARQM KEQLRREQQV LDGKVAVVNS
110 120 130 140 150
LGLNNCRTEK DKTTLESLTQ QLAVKQNEEG KFSHAMMDFN MSGDSDGSAG
160 170 180 190 200
VSESRIYRES RGRGSNEPHI KRPMNAFMVW AKDERRKILQ AFPDMHNSNI
210 220 230 240 250
SKILGSRWKA MTNLEKQPYY EEQARLSKQH LEKYPDYKYK PRPKRTCLVD
260 270 280 290 300
GKKLRIGEYK AIMRNRRQEM RQYFNVGQQA QIPIATAGVV YPGAIAMAGM
310 320 330 340 350
PSPHLPSEHS SVSSSPEPGM PVIQSTYGVK GEEPHIKEEM QADDINGEIY
360 370
DEYDEEEDDP DVDYGSDSEN HIAGQAN
Length:377
Mass (Da):42,025
Last modified:November 16, 2011 - v1
Checksum:i6F782E0D5043F606
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEFK01192710 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSSHAT00000001656; ENSSHAP00000001639; ENSSHAG00000001459

Similar proteinsi

Entry informationi

Entry nameiG3VEN5_SARHA
AccessioniPrimary (citable) accession number: G3VEN5
Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: March 28, 2018
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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