UniProtKB - G3V959 (G3V959_RAT)
Protein
Submitted name:
FLN29 gene product, isoform CRA_b
Gene
Trafd1
Organism
Rattus norvegicus (Rat)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 28 – 103 | TRAF-typePROSITE-ProRule annotationAdd BLAST | 76 |
GO - Molecular functioni
- zinc ion binding Source: InterPro
GO - Biological processi
- negative regulation of innate immune response Source: Ensembl
Keywordsi
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Submitted name: FLN29 gene product, isoform CRA_bImportedSubmitted name: TRAF-type zinc finger domain-containing protein 1Imported |
Gene namesi | ORF Names:rCG_21541Imported |
Organismi | Rattus norvegicus (Rat)Imported |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 620171, Trafd1 |
Expressioni
Gene expression databases
Bgeei | ENSRNOG00000001351, Expressed in testis and 21 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 28 – 103 | TRAF-typeInterPro annotationAdd BLAST | 76 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 402 – 432 | DisorderedSequence analysisAdd BLAST | 31 | |
Regioni | 464 – 491 | DisorderedSequence analysisAdd BLAST | 28 | |
Regioni | 523 – 581 | DisorderedSequence analysisAdd BLAST | 59 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 413 – 431 | PolyampholyteSequence analysisAdd BLAST | 19 | |
Compositional biasi | 540 – 554 | PolarSequence analysisAdd BLAST | 15 |
Zinc finger
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Zinc fingeri | 28 – 103 | TRAF-typePROSITE-ProRule annotationAdd BLAST | 76 |
Keywords - Domaini
Zinc-fingerPROSITE-ProRule annotationPhylogenomic databases
GeneTreei | ENSGT00530000063869 |
HOGENOMi | CLU_034057_0_0_1 |
OMAi | HTQITCK |
OrthoDBi | 1113262at2759 |
TreeFami | TF331416 |
Family and domain databases
Gene3Di | 3.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR013083, Znf_RING/FYVE/PHD IPR001293, Znf_TRAF |
PROSITEi | View protein in PROSITE PS50145, ZF_TRAF, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
G3V959-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAEFPDDQAA RLCDNCKKEI PVFNFTIHEI HCQRNIGVCP VCKEPFPKSD
60 70 80 90 100
MDIHVATEHC QVTCKCNKKL EKRQLKQHVE TECPLRLAVC QHCDLELSVV
110 120 130 140 150
KLKEHEDYCG ARTELCGSCG RNVLVKELQT HPAVCGRVEE EKRSEAAVPP
160 170 180 190 200
EAYDEPWSQD RIWIASQLLR QIEALDPPMR LPGRPLRAFE ADPFYSRTAS
210 220 230 240 250
QRGVTAHFPI QNNLFEEQER QERNRSHQSP KDSAENSAHL DFMLALSLQN
260 270 280 290 300
EGQASSMVEQ GFWESVPEAD PARAGPTSLG DIKGAADETL LPCEFCEELY
310 320 330 340 350
PEELLIDHQT SCNPSHALRS LNTGSSSIRG VEDPGAIFQN FLQQATSNQL
360 370 380 390 400
DTLMGLSSSA AVEDSIIIPC EFCGVQLEEE VLFHHQDQCD QRPATANHRA
410 420 430 440 450
MEGIPTQDSQ PEDRSPELSR RRVKHQGDLS SGYMDDVKQE SVKGSTYSLS
460 470 480 490 500
PNRTMNNVST CNRLLNSSGP RSDCQRSPPG VLKLNNSGSQ DIRGRIRGSQ
510 520 530 540 550
NGPIASAHAP VIHSIRNLYP ENLAPSFPHG SPGRFGASGR SEGSRSSRVT
560 570 580
PTAASYHSRA AKAKPPKQQG AGDAEEEEEE E
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketQ99MM4 | TRAD1_RAT | TRAF-type zinc finger domain-contai... | Trafd1 Fln29 | 576 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07036375 Genomic DNA No translation available. CH473973 Genomic DNA Translation: EDM13744.1 |
RefSeqi | NP_446212.2, NM_053760.2 XP_006249438.1, XM_006249376.3 |
Genome annotation databases
Ensembli | ENSRNOT00000033984; ENSRNOP00000036651; ENSRNOG00000001351 ENSRNOT00000091375; ENSRNOP00000072077; ENSRNOG00000001351 |
GeneIDi | 114635 |
KEGGi | rno:114635 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07036375 Genomic DNA No translation available. CH473973 Genomic DNA Translation: EDM13744.1 |
RefSeqi | NP_446212.2, NM_053760.2 XP_006249438.1, XM_006249376.3 |
3D structure databases
SMRi | G3V959 |
ModBasei | Search... |
Genome annotation databases
Ensembli | ENSRNOT00000033984; ENSRNOP00000036651; ENSRNOG00000001351 ENSRNOT00000091375; ENSRNOP00000072077; ENSRNOG00000001351 |
GeneIDi | 114635 |
KEGGi | rno:114635 |
Organism-specific databases
CTDi | 10906 |
RGDi | 620171, Trafd1 |
Phylogenomic databases
GeneTreei | ENSGT00530000063869 |
HOGENOMi | CLU_034057_0_0_1 |
OMAi | HTQITCK |
OrthoDBi | 1113262at2759 |
TreeFami | TF331416 |
Gene expression databases
Bgeei | ENSRNOG00000001351, Expressed in testis and 21 other tissues |
Family and domain databases
Gene3Di | 3.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR013083, Znf_RING/FYVE/PHD IPR001293, Znf_TRAF |
PROSITEi | View protein in PROSITE PS50145, ZF_TRAF, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | G3V959_RAT | |
Accessioni | G3V959Primary (citable) accession number: G3V959 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 16, 2011 |
Last sequence update: | November 16, 2011 | |
Last modified: | February 10, 2021 | |
This is version 62 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |