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Protein
Submitted name:

SRY box 17

Gene

Sox17

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi68 – 136HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Enzyme and pathway databases

ReactomeiR-RNO-3769402 Deactivation of the beta-catenin transactivating complex

Names & Taxonomyi

Protein namesi
Submitted name:
SRY box 17Imported
Submitted name:
SRY-box containing gene 17 (Predicted), isoform CRA_aImported
Gene namesi
Name:Sox17Imported
Synonyms:Sox17_predictedImported
ORF Names:rCG_30490Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi1305371 Sox17

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Expressioni

Gene expression databases

BgeeiENSRNOG00000027357

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000033962

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 136HMG boxInterPro annotationAdd BLAST69
Domaini278 – 422Sox C-terminalInterPro annotationAdd BLAST145

Phylogenomic databases

eggNOGiENOG410IPZH Eukaryota
ENOG41114B8 LUCA
GeneTreeiENSGT00760000118988
KOiK04495
OMAiHMGGHYR
OrthoDBiEOG091G0CYU

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR033392 Sox7/17/18_central
IPR021934 Sox_C
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
PF12067 Sox17_18_mid, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS51516 SOX_C, 1 hit

Sequencei

Sequence statusi: Complete.

G3V923-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS DDQSQPRSAQ PAVMAGLGPC PWAESLSSLG DVKVKGEVVA
60 70 80 90 100
SSGAPAGTSS RAKAESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK
110 120 130 140 150
MLGKSWKALT LAEKRPFVEE AERLRVQHMQ DHPNYKYRPR RRKQVKRMKR
160 170 180 190 200
VEGGFLHALA EPQAGALGPE GGRVAMDGLG LPFPEPGYPA GPPLMSPHMG
210 220 230 240 250
AHYRDCQGLG APALDGYPLP TPDTSPLDGV EQDPAFFAAP LPGDCPAAGA
260 270 280 290 300
YTYAQVSDYA VPAEPSAGPM RVGPDPSGSA MPGILAPPSA LHLYYGAMGS
310 320 330 340 350
PAASAGRGFH AQPQQPLQPQ PPPPPPPPPP PQQHPTHGPG QPSPPPEALP
360 370 380 390 400
CRDGTEPNQP TELLGEVDRT EFEQYLHFVY KPEMGLPYQG HDCGVNLSDS
410 420
HGAISSVVSD ASSAVYYCNY PDI
Length:423
Mass (Da):45,039
Last modified:November 16, 2011 - v1
Checksum:iF035869391F48525
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07047008 Genomic DNA No translation available.
CH473984 Genomic DNA Translation: EDM11594.1
CH473984 Genomic DNA Translation: EDM11595.1
RefSeqiNP_001101372.1, NM_001107902.1
XP_006237871.1, XM_006237809.3
XP_006237874.1, XM_006237812.3
XP_008761759.1, XM_008763537.2
XP_008761760.1, XM_008763538.2
XP_017448812.1, XM_017593323.1
XP_017448813.1, XM_017593324.1
XP_017448814.1, XM_017593325.1
XP_017448815.1, XM_017593326.1
XP_017448816.1, XM_017593327.1
UniGeneiRn.7884

Genome annotation databases

EnsembliENSRNOT00000033116; ENSRNOP00000033962; ENSRNOG00000027357
GeneIDi312936
KEGGirno:312936

Similar proteinsi

Entry informationi

Entry nameiG3V923_RAT
AccessioniPrimary (citable) accession number: G3V923
Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: May 23, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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