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UniProtKB - G3V706 (G3V706_RAT)

Entry version 60 (10 Feb 2021)
Sequence version 1 (16 Nov 2011)
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Protein
Submitted name:

EvC ciliary complex subunit 1

Gene

Evc

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-RNO-5632684, Hedgehog 'on' state

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
EvC ciliary complex subunit 1Imported
Submitted name:
RCG35840Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:EvcImported
ORF Names:rCG_35840Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRattus norvegicus (Rat)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10116 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002494 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 14

Organism-specific databases

Rat genome database

More...RGDi		735186, Evc

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei21 – 41HelicalSequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell membraneARBA annotation, Cell projectionARBA annotation, Cytoplasm, CytoskeletonARBA annotation, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		G3V706

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSRNOG00000007564, Expressed in adult mammalian kidney and 20 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10116.ENSRNOP00000010541

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni58 – 96DisorderedSequence analysisAdd BLAST39
Regioni148 – 178DisorderedSequence analysisAdd BLAST31
Regioni825 – 858DisorderedSequence analysisAdd BLAST34
Regioni916 – 1003DisorderedSequence analysisAdd BLAST88

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili694 – 722Sequence analysisAdd BLAST29
Coiled coili872 – 906Sequence analysisAdd BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi74 – 94PolyampholyteSequence analysisAdd BLAST21
Compositional biasi154 – 178PolarSequence analysisAdd BLAST25
Compositional biasi830 – 858PolarSequence analysisAdd BLAST29
Compositional biasi920 – 950PolyampholyteSequence analysisAdd BLAST31

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QUDD, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000154127

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_014037_0_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		CSSAKAT

Database of Orthologous Groups

More...OrthoDBi		133009at2759

TreeFam database of animal gene trees

More...TreeFami		TF335835

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR026582, Evc
IPR026501, Limbin/Ellis-van_Creveld

The PANTHER Classification System

More...PANTHERi		PTHR16795, PTHR16795, 1 hit
PTHR16795:SF13, PTHR16795:SF13, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G3V706-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTCRRDARLQ LGREALQAAP TLLVPAVLLG ALLGLGLGLW LGCRARRLRA 
        60         70         80         90        100
RLQKDDTKHL LRSSEPPAQS LRDTSSKARR RQRETTRDED APEVCEPSLS 
       110        120        130        140        150
GNITAFALKA RVVYPINQKF RPLADGSSHP SLHENLTQAA AILPHLPHQP 
       160        170        180        190        200
AEASPASSLG SLSQAGKEDG SSSSSMQSTY SDDRVLQCAF LRVGSFPEIL 
       210        220        230        240        250
AYESVDIDLC VCSLHLKDLL QVDAALRQEK HLMFLQILKA CLLECFPKKK 
       260        270        280        290        300
PEEELYQKIL SKQEHDLEEL EKGLQARLAN TEMLGTGDSG YISLADVERK 
       310        320        330        340        350
ERELSEQLID NMGAFWKQME SMQPILMDQL KCSSSKARQL MMTLTGRMIV 
       360        370        380        390        400
AEGLLHESQD LHVLDTLERT MGRAHMARIV EFLRTQIQEE TKCRLAAISR 
       410        420        430        440        450
GLELLTVQGQ LSGRQKEELL TQQHKAFWEE AECFGREFMQ RGKDLVQVSQ 
       460        470        480        490        500
AHRAEAVAEL TRAQEEERRI FLADTQPTSD PEEFLKAFHE VLERQRLTRS 
       510        520        530        540        550
DQEGEEDTRI TEAMAALCQE LYCGTMETFQ KFVDTLFLKT LPEVSSLPVA 
       560        570        580        590        600
ECEALRQQVQ EQAARQLGQA DRFRRRQWGL LCDLLEQDKR VWLEECTLST 
       610        620        630        640        650
VLQRQLRDHH ESTIHGVLSR FSGLSEESTR GILQGHELLL CSALRRLALR 
       660        670        680        690        700
GTTITALAQM RLSGKKRLLQ ELHEQLALEQ GVSPCLEEHQ WQLLRALEAR 
       710        720        730        740        750
ILEETARLED EAQQTALRLQ QQLLAEAQEA GQLLQLHSER AIGQALLVHA 
       760        770        780        790        800
RNVASKGRTR DKEDFKRTLV ETVVESVYVT STSVNRLVQV HYQGIGKLLQ 
       810        820        830        840        850
AHEEQLLQRL KTLQDERINA YKLWKKQEFS DPPSESQTPG GTHGAPQAVQ 
       860        870        880        890        900
QRMTSQRKKL LDQFTKHQQG RLNSQRQKAQ ELDQLEAQLE TQLQEAEQTL 
       910        920        930        940        950
ISELATLARV PLAENKPFSN KRGLPEKPVR TKRKKPPPRE REDLGLPNDD 
       960        970        980        990       1000
HPALADHSTG PLSAVYSASP PILVHSNGKL GQQDGEACDG ENTRKILQKR 

SNL
Length:1,003
Mass (Da):113,328
Last modified:November 16, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7B7561F1307545F0
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AABR07015810 Genomic DNA No translation available.
CH473963 Genomic DNA Translation: EDM00025.1

NCBI Reference Sequences

More...RefSeqi		NP_001163910.1, NM_001170439.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSRNOT00000010541; ENSRNOP00000010541; ENSRNOG00000007564

Database of genes from NCBI RefSeq genomes

More...GeneIDi		289712

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		rno:289712

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07015810 Genomic DNA No translation available.
CH473963 Genomic DNA Translation: EDM00025.1
RefSeqiNP_001163910.1, NM_001170439.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000010541

Proteomic databases

PRIDEiG3V706

Genome annotation databases

EnsembliENSRNOT00000010541; ENSRNOP00000010541; ENSRNOG00000007564
GeneIDi289712
KEGGirno:289712

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		2121
RGDi735186, Evc

Phylogenomic databases

eggNOGiENOG502QUDD, Eukaryota
GeneTreeiENSGT00940000154127
HOGENOMiCLU_014037_0_0_1
OMAiCSSAKAT
OrthoDBi133009at2759
TreeFamiTF335835

Enzyme and pathway databases

ReactomeiR-RNO-5632684, Hedgehog 'on' state

Gene expression databases

BgeeiENSRNOG00000007564, Expressed in adult mammalian kidney and 20 other tissues

Family and domain databases

InterProiView protein in InterPro
IPR026582, Evc
IPR026501, Limbin/Ellis-van_Creveld
PANTHERiPTHR16795, PTHR16795, 1 hit
PTHR16795:SF13, PTHR16795:SF13, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG3V706_RAT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G3V706
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: February 10, 2021
This is version 60 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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