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Protein
Submitted name:

SEH1 like nucleoporin

Gene

SEH1L

Organism
Loxodonta africana (African elephant)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transportSAAS annotation, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
SEH1 like nucleoporinImported
Gene namesi
Name:SEH1LImported
OrganismiLoxodonta africana (African elephant)Imported
Taxonomic identifieri9785 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaAfrotheriaProboscideaElephantidaeLoxodonta
Proteomesi
  • UP000007646 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi9785.ENSLAFP00000005417

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 152WD_REPEATS_REGIONInterPro annotationAdd BLAST145
Repeati8 – 40WDPROSITE-ProRule annotationAdd BLAST33
Domaini274 – 315WD_REPEATS_REGIONInterPro annotationAdd BLAST42
Repeati274 – 306WDPROSITE-ProRule annotationAdd BLAST33

Sequence similaritiesi

Belongs to the WD repeat SEC13 family.SAAS annotation

Keywords - Domaini

RepeatSAAS annotation, WD repeatPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG2445 Eukaryota
ENOG410XRNW LUCA
GeneTreeiENSGT00550000074999
InParanoidiG3SY73
OMAiIYEAPDI
OrthoDBiEOG091G09MA
TreeFamiTF105924

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR037597 Nucleoporin_Seh1
IPR037363 Sec13/Seh1_fam
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PANTHERiPTHR11024 PTHR11024, 1 hit
PTHR11024:SF3 PTHR11024:SF3, 1 hit
PfamiView protein in Pfam
PF00400 WD40, 2 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 5 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 2 hits
PS50294 WD_REPEATS_REGION, 2 hits

Sequencei

Sequence statusi: Complete.

G3SY73-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFVAHSIAAD HKDLIHDVSF DFHGRRMATC SSDQSVKVWD KSENGDWHCT
60 70 80 90 100
ASWKTHSGSV WRVTWAHPEF GQVLASCSFD RTAAVWEEIV GESNDKLRGQ
110 120 130 140 150
SHWVKRTTLV DSRTSVTDVK FAPKHMGLML ATCSADGIVR IYEAPDVMNL
160 170 180 190 200
SQWSLQHEIS CKLSCSCISW NPSSSRAHSP MIAVGSDDGS PNAMAKVQIF
210 220 230 240 250
EYNENTRKYA KAETLMTVTD PVHDIAFAPN LGRSFHILAV ATKDVRIFTL
260 270 280 290 300
KPVRKELTSS GGPTKFEIHI VAQFDNHNSQ VWRVSWNITG TVLASSGDDG
310 320 330 340 350
CVRLWKANYM DNWKCTGILK GNGSPVSGNS QQGNSNPSLG SNIPNLQNSL
360
NGSSASRKHS
Length:360
Mass (Da):39,696
Last modified:November 16, 2011 - v1
Checksum:i48CA1FDD71481BD6
GO

Sequence databases

RefSeqiXP_010585175.1, XM_010586873.1

Genome annotation databases

EnsembliENSLAFT00000006452; ENSLAFP00000005417; ENSLAFG00000006450
GeneIDi100667470

Similar proteinsi

Entry informationi

Entry nameiG3SY73_LOXAF
AccessioniPrimary (citable) accession number: G3SY73
Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 25, 2018
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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