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UniProtKB - G3N9H3 (G3N9H3_GASAC)

Entry version 55 (07 Oct 2020)
Sequence version 1 (16 Nov 2011)
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Protein
Submitted name:

Arginine-glutamic acid dipeptide (RE) repeats b

Gene
N/A
Organism
Gasterosteus aculeatus (Three-spined stickleback)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Arginine-glutamic acid dipeptide (RE) repeats bImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiGasterosteus aculeatus (Three-spined stickleback)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri69293 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Neoteleostei › Acanthomorphata › Eupercaria › Perciformes › Cottioidei › Gasterosteales › Gasterosteidae › Gasterosteus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007635 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

AcetylationARBA annotation, PhosphoproteinARBA annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		69293.ENSGACP00000001963

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini13 – 111ELM2InterPro annotationAdd BLAST99
Domaini115 – 167SANTInterPro annotationAdd BLAST53

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 38DisorderedSequence analysisAdd BLAST38
Regioni170 – 237DisorderedSequence analysisAdd BLAST68
Regioni278 – 645DisorderedSequence analysisAdd BLAST368
Regioni657 – 708DisorderedSequence analysisAdd BLAST52
Regioni727 – 751DisorderedSequence analysisAdd BLAST25
Regioni1151 – 1176DisorderedSequence analysisAdd BLAST26

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 17PolarSequence analysisAdd BLAST17
Compositional biasi186 – 208PolarSequence analysisAdd BLAST23
Compositional biasi303 – 337PolarSequence analysisAdd BLAST35
Compositional biasi338 – 423PolyampholyteSequence analysisAdd BLAST86
Compositional biasi424 – 452PolarSequence analysisAdd BLAST29
Compositional biasi527 – 557PolarSequence analysisAdd BLAST31
Compositional biasi581 – 595Pro-richSequence analysisAdd BLAST15
Compositional biasi609 – 645Pro-richSequence analysisAdd BLAST37
Compositional biasi664 – 693PolarSequence analysisAdd BLAST30

Keywords - Domaini

Zinc-fingerARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG2133, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000153615

Identification of Orthologs from Complete Genome Data

More...OMAi		QRMAMEQ

TreeFam database of animal gene trees

More...TreeFami		TF328554

Family and domain databases

Conserved Domains Database

More...CDDi		cd00202, ZnF_GATA, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.50.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR002951, Atrophin-like
IPR000949, ELM2_dom
IPR009057, Homeobox-like_sf
IPR001005, SANT/Myb
IPR017884, SANT_dom
IPR000679, Znf_GATA
IPR013088, Znf_NHR/GATA

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03154, Atrophin-1, 1 hit
PF01448, ELM2, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01189, ELM2, 1 hit
SM00717, SANT, 1 hit
SM00401, ZnF_GATA, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF46689, SSF46689, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51156, ELM2, 1 hit
PS51293, SANT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G3N9H3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
PSHRCRSLNS TQGEIRVGPS HQAKLPEMQP RSAPSLQTQT QSEELMWTPG 
        60         70         80         90        100
VNDSFLLLRS MAAFAGMCDG GSTEDGCLAA SRDDTTLNAL NMLHASHYDA 
       110        120        130        140        150
AKALQRLVKK PLPKLIEKCW SEDDVKRFIK GLRQYGKNFF RIRKDFLPTK 
       160        170        180        190        200
KTGELITFYY HWKKTPEAAG TRAYRQQRRQ PSSRKAKTRS AAAPVTPSRN 
       210        220        230        240        250
YSVDASSASE DDLDSEDSEQ DVKSCSRCGT TSSKDWHQGR RDNALLCTTC 
       260        270        280        290        300
RTYENKHGCL PPAPKCAGAP FMFKPVKEEE EVNSKHGMRT RRSRAPLSTL 
       310        320        330        340        350
RSGHRRLTGS PTNEDHQSSQ PSPSVTTSNS LRSSSTDIKN ESSKKTNKKL 
       360        370        380        390        400
KEELTSPKTT KRARESPAQE PDEAEKAAPK RPKTRDPRSS RSDGEAEVEE 
       410        420        430        440        450
ESSSESRSAQ DDGSSDTKDI DQDNRSSSPS IPSPQQGNES DSDSSAQPNG 
       460        470        480        490        500
VQSDPGAVAA AVSADPPTPQ APPSHGRPIT PMQSTPLLIL PEPPPAPQTP 
       510        520        530        540        550
SASCCQLAAQ RRSGRPQLAP HSLSAPPCLP SASSQDSPLS AAFQPPPVLN 
       560        570        580        590        600
STHPRGQSPQ GPPRPAPFFR ESQLPQSALS GPQVKPPPTT PIPPSHKQMP 
       610        620        630        640        650
HQSATPFPQM PANLPPPPAL KPLNILPNQH PPGAPPPPLQ LMPQPLPMQL 
       660        670        680        690        700
LPTQLPVISP VPNHPGKSMT SSHPPASASH PLTSVTPSNI GPVPSLQPSF 
       710        720        730        740        750
PPLPLRPSSI TMAGGCQIQI KEEPLDEIEE AESSPSPPRS PSPEPTVVSV 
       760        770        780        790        800
ASHASQSARF IKHLDRGYNS CARTDLFFTP LSSSKLAKKR EEAVEKSRRE 
       810        820        830        840        850
AELCARQERE SFPSCFKRLQ SYSCLERASS SSHDSRMSDV QMTVQGHGRP 
       860        870        880        890        900
SFEQPPTTVA AVPPYIGPDT PALRTLSEYA RPHVMSPSNR SHPFYVSLSP 
       910        920        930        940        950
GDPLLAYHMP GLYSAEPSHR ERELRNMRER ELRERMKPGF EVKPPDMETL 
       960        970        980        990       1000
HPSANPMEHF ARHGAIGLPH IPGPPHHFAS FHPGLNQMER ERMMLAGPQL 
      1010       1020       1030       1040       1050
RPELSYAERL TAERLHAERM ASVATDPAVR LQMLNVTPHH HQHSHIHSHL 
      1060       1070       1080       1090       1100
HLHQQDPLGQ GSGPHPLVDP LATGPRLARF PFPGGPIHNQ LLSDLPHDHE 
      1110       1120       1130       1140       1150
MLRHPLFGGA YPRELQGPIP QMSAAHQLQA MHAQSAELQR MAMEQQWLHG 
      1160       1170 
HHLHGGPLPS QEDYYSRLKK EGDKPS
Length:1,176
Mass (Da):129,002
Last modified:November 16, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3747B8B7DC1A957B
GO

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSGACT00000001966; ENSGACP00000001963; ENSGACG00000001510

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi69293.ENSGACP00000001963

Genome annotation databases

EnsembliENSGACT00000001966; ENSGACP00000001963; ENSGACG00000001510

Phylogenomic databases

eggNOGiKOG2133, Eukaryota
GeneTreeiENSGT00940000153615
OMAiQRMAMEQ
TreeFamiTF328554

Family and domain databases

CDDicd00202, ZnF_GATA, 1 hit
Gene3Di3.30.50.10, 1 hit
InterProiView protein in InterPro
IPR002951, Atrophin-like
IPR000949, ELM2_dom
IPR009057, Homeobox-like_sf
IPR001005, SANT/Myb
IPR017884, SANT_dom
IPR000679, Znf_GATA
IPR013088, Znf_NHR/GATA
PfamiView protein in Pfam
PF03154, Atrophin-1, 1 hit
PF01448, ELM2, 1 hit
SMARTiView protein in SMART
SM01189, ELM2, 1 hit
SM00717, SANT, 1 hit
SM00401, ZnF_GATA, 1 hit
SUPFAMiSSF46689, SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51156, ELM2, 1 hit
PS51293, SANT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG3N9H3_GASAC
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G3N9H3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: October 7, 2020
This is version 55 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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