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UniProtKB - G3DQK2 (G3DQK2_9PICO)

Entry version 61 (10 Feb 2021)
Sequence version 1 (16 Nov 2011)
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Protein

Genome polyprotein

Gene
N/A
Organism
Duck hepatitis virus FC64/CHN/2009
Status
Unreviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicaseARBA annotation, Hydrolase, Ion channel, Nucleotidyltransferase, Protease, RNA-bindingARBA annotation, RNA-directed RNA polymeraseARBA annotation, Thiol proteaseARBA annotation, Transferase, Viral ion channelARBA annotation
Biological processHost-virus interaction, Ion transport, Transport, Viral attachment to host cellARBA annotation, Viral RNA replicationARBA annotation, Virus entry into host cell
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Genome polyproteinARBA annotation
Alternative name(s):
P1CARBA annotation
P1DARBA annotation
Protein 2CARBA annotation
Protein 3AARBA annotation
Virion protein 1ARBA annotation
Virion protein 3ARBA annotation
protein 2BARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDuck hepatitis virus FC64/CHN/2009Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri885377 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Riboviria › Orthornavirae › Pisuviricota › Pisoniviricetes › Picornavirales › Picornaviridae › Avihepatovirus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000166858 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Capsid protein, Host cytoplasmARBA annotation, Host cytoplasmic vesicleARBA annotation, Host membraneARBA annotation, Membrane, T=pseudo3 icosahedral capsid proteinARBA annotation, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

Covalent protein-RNA linkageARBA annotation, PhosphoproteinARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini748 – 946AIG1-type GInterPro annotationAdd BLAST199
Domaini1270 – 1432SF3 helicaseInterPro annotationAdd BLAST163
Domaini1610 – 1795Peptidase C3InterPro annotationAdd BLAST186
Domaini2014 – 2129RdRp catalyticInterPro annotationAdd BLAST116

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni250 – 283DisorderedSequence analysisAdd BLAST34

Family and domain databases

Conserved Domains Database

More...CDDi		cd00205, rhv_like, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.10.10, 1 hit
2.60.120.20, 2 hits
3.30.70.270, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR043502, DNA/RNA_pol_sf
IPR006703, G_AIG1
IPR004004, Helic/Pol/Pept_Calicivir-typ
IPR000605, Helicase_SF3_ssDNA/RNA_vir
IPR014759, Helicase_SF3_ssRNA_vir
IPR027417, P-loop_NTPase
IPR044067, PCV_3C_PRO
IPR000199, Peptidase_C3A/C3B_picornavir
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR001676, Picornavirus_capsid
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR033703, Rhv-like
IPR001205, RNA-dir_pol_C
IPR007094, RNA-dir_pol_PSvirus
IPR029053, Viral_coat

Pfam protein domain database

More...Pfami		View protein in Pfam
PF04548, AIG1, 2 hits
PF00548, Peptidase_C3, 1 hit
PF00680, RdRP_1, 1 hit
PF00073, Rhv, 1 hit
PF00910, RNA_helicase, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00918, CALICVIRUSNS

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50494, SSF50494, 1 hit
SSF52540, SSF52540, 2 hits
SSF56672, SSF56672, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51720, G_AIG1, 1 hit
PS51874, PCV_3C_PRO, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51218, SF3_HELICASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G3DQK2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDTLTKNIED ATVNIIGSCA EKVEEAISGL GAVESVASTN SAIATANATT 
        60         70         80         90        100
TQTILDPTEG STDDFYSCSY EVGAQGDNIS RLVHLVTGQW VPNDDYYACL 
       110        120        130        140        150
RWLATPACFF QNNTQPAYGQ TRYFRFIRCG FHFRLLVNAP SGSAGALMLV 
       160        170        180        190        200
WMPYPYCRVL SGDNQIHTNV ERRSLMNLPY AILDLRTNTE IDLVVPYVNY 
       210        220        230        240        250
RNYVEITTSD TTGGAICVIV LGKYRHGNGT SNTVDFTLFG ELLETDLQCP 
       260        270        280        290        300
RPFDNQGKRK PRRRPIHKPK NPPQEPRVII QPGPGAANLS NSSAIAMAES 
       310        320        330        340        350
TALANEGTAV DYSIAGCASS VDDVIMVLRR WQILASFQWQ STLTPSARIN 
       360        370        380        390        400
RYQLIFRNIP TFSLFFDKFQ YWRGSLEVKF MTFGSQFNTG RYQMSWYPIA 
       410        420        430        440        450
DGEQSLAQCQ NSVFVTGDVC ATPVTLTLPF TSTTWRKSTR DPYGYLMWHV 
       460        470        480        490        500
VNRLTVNSSA PSNIDCTVLL RVGKDFQFTA PLYGNLQMAT NNQGDTNQLG 
       510        520        530        540        550
DDEPVCFLNF ETANVPIQGE SHTLVKHLFG RQWLVRTVQH ASTVQELDLQ 
       560        570        580        590        600
VPDRGHASLI RFFAYFSGEI ILTIVNNGTT PAMVAHSYSM DDLSSEYAVT 
       610        620        630        640        650
AMGGVMIPAN SAKNISVPFY SVTPLRPTRP IPGTSEATFG RLFMWTQSGS 
       660        670        680        690        700
LSVFMGLKKP ALFFPLPAPT STTLSRGSNG FIPTLDQSGD EVDCHFCKIC 
       710        720        730        740        750
SKMKRMWKPK GYFRFCLRLK TLAFELDLEI ESDQIRNKKD LTTEGVEPNP 
       760        770        780        790        800
GPILVVGKSG SGKSRLCNVL AGVELFGSKL SPRSVTMVHQ VETIDIEGKK 
       810        820        830        840        850
VTIVDSPETP NYDGPISAFF YLIEAGRFTA EDKEYIQMMR KRFPSFEKST 
       860        870        880        890        900
ILILNRADEL KTDDDIRNWI KTSGELDSLV RACGGRIAKF HRYKINRAKL 
       910        920        930        940        950
LEKAATLPEF VSHLPRLVYK DRKMYRHYGV QCGSTVFHMD SENILESALN 
       960        970        980        990       1000
GEVTIKQEKW NGNWKPAGDH MQSTASMYLK SQTMPKFTFS IDENCETWAR 
      1010       1020       1030       1040       1050
HLLGDYGETQ GQIFKERLMW AVALGFFMTM KITTDQSFPG KDAIHTVLTK 
      1060       1070       1080       1090       1100
ISNFIFGGLE NEVVRVVIRT VIRIVCYLIL YIHSPNIVTT GTLVALLALD 
      1110       1120       1130       1140       1150
ATSMSMDQGL KTLCMSLVDG DFGKFCSALL EKIQTVDEAD LKKTIPKFND 
      1160       1170       1180       1190       1200
MLEDQSGKTT SPKSFNDWTT CAKNVQWWLE SFVKVVNWLK EKIFPSKTDP 
      1210       1220       1230       1240       1250
TLQWLQDHEE HIAIMLALCD EHLCMLRTEK DYICEHNTRP KHQCLVEMVS 
      1260       1270       1280       1290       1300
GTLNQLQGIS SARELAARLQ HVLNKLHQVN FEPELEWTHR PEPLGIWISG 
      1310       1320       1330       1340       1350
GPGVGKSFLS NYIVKEIAKL KHWKSYANPT GSKHMDGYVS QEIHVFDDFG 
      1360       1370       1380       1390       1400
QNREEEDYSL ICNLISSVPF ITPKASVEAK GTQYRGRLVV VTTNRRDFTS 
      1410       1420       1430       1440       1450
CKLTDPDALE RRFPIRLNIR PLQKYNHKGR LDVATAMRDG SLQGGACWER 
      1460       1470       1480       1490       1500
DIGQLGLECW NPINGQTLID EIMSELQVRQ EVASFMNQSN VRRFSDPETL 
      1510       1520       1530       1540       1550
FSDLEDLKLE FDFDQLEQQA KLFAKPKEGK ISKFRAWVRD CTGKIKGFLE 
      1560       1570       1580       1590       1600
RNRAWILGIG TLGTIMSLVT MCVPLARRFA QSIYSQQPVA KTLPKDFKVA 
      1610       1620       1630       1640       1650
VKKHIEKLET GLEDQSGRVN FRHICNRLVN VSNEDEVATG LAIGGKNVLT 
      1660       1670       1680       1690       1700
FGHSKFTQLD EIRDMQFNAP AKGTPITYDG EPTDLQLLEC DIPHQFKDVS 
      1710       1720       1730       1740       1750
KLIATEDYRG NGWLVWKDQD QYMVQDVTKI RPFGSTTTAS GTTSCQTYIY 
      1760       1770       1780       1790       1800
NCKTGPGSCG GVLVAQIGGN LKILGIHTSG NGTMGAANRV FPVFNQGKVV 
      1810       1820       1830       1840       1850
SKQYAGKILY HQPRKTAYMK SPVYEDSPYE PAVLSINDQR LEVKIEDMAK 
      1860       1870       1880       1890       1900
KASDKYIGNV FQPPPEAFQL AKTHVAEKLS RVLGSHETIS YESAVSSDVI 
      1910       1920       1930       1940       1950
PMNWDTSPGI KYKGETKRQL VLKSSFRQDV MEQLQSPSTV FTCYLKDELR 
      1960       1970       1980       1990       2000
KKEKIKEGKT RGIEACNFDH TVAYRMVMGD IFSNIYDDSF IMSGCAVGIN 
      2010       2020       2030       2040       2050
PFCEWDNLLA NLQPYNLCLD FSGFDGSLSA QILEEAVDVL SYFHNDPALV 
      2060       2070       2080       2090       2100
KRIHAPTIYS THYVTDEIWQ VEGGMCSGSP CTTVVNSIVN QLACYTILAV 
      2110       2120       2130       2140       2150
LGYDINQCYV VSYGDDCVLS VPEVRDISKL SHYFKLFFGM TATASDKESD 
      2160       2170       2180       2190       2200
ITWLAPMEIE FLKRTPAFLP GTRKIIGVLD KEVLEGKIQW CKGPEAFKQQ 
      2210       2220       2230       2240 
LDSFLLEAAL HGEEYYHEVT SKLKARCPVF DIQPWGVAKL RAYTACMMI
Length:2,249
Mass (Da):252,566
Last modified:November 16, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7CE71AA823D9E88C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
HQ232302 Genomic RNA Translation: ADO34208.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HQ232302 Genomic RNA Translation: ADO34208.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

CDDicd00205, rhv_like, 2 hits
Gene3Di2.40.10.10, 1 hit
2.60.120.20, 2 hits
3.30.70.270, 1 hit
InterProiView protein in InterPro
IPR043502, DNA/RNA_pol_sf
IPR006703, G_AIG1
IPR004004, Helic/Pol/Pept_Calicivir-typ
IPR000605, Helicase_SF3_ssDNA/RNA_vir
IPR014759, Helicase_SF3_ssRNA_vir
IPR027417, P-loop_NTPase
IPR044067, PCV_3C_PRO
IPR000199, Peptidase_C3A/C3B_picornavir
IPR009003, Peptidase_S1_PA
IPR043504, Peptidase_S1_PA_chymotrypsin
IPR001676, Picornavirus_capsid
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR033703, Rhv-like
IPR001205, RNA-dir_pol_C
IPR007094, RNA-dir_pol_PSvirus
IPR029053, Viral_coat
PfamiView protein in Pfam
PF04548, AIG1, 2 hits
PF00548, Peptidase_C3, 1 hit
PF00680, RdRP_1, 1 hit
PF00073, Rhv, 1 hit
PF00910, RNA_helicase, 1 hit
PRINTSiPR00918, CALICVIRUSNS
SUPFAMiSSF50494, SSF50494, 1 hit
SSF52540, SSF52540, 2 hits
SSF56672, SSF56672, 1 hit
PROSITEiView protein in PROSITE
PS51720, G_AIG1, 1 hit
PS51874, PCV_3C_PRO, 1 hit
PS50507, RDRP_SSRNA_POS, 1 hit
PS51218, SF3_HELICASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG3DQK2_9PICO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G3DQK2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: February 10, 2021
This is version 61 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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