Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 39 (10 Apr 2019)
Sequence version 1 (16 Nov 2011)
Previous versions | rss
Other tutorials and videosHelp videoFeedback
Protein
Submitted name:

RNase3 domain-containing protein

Gene

VDAG_00471

Organism
Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137) (Verticillium wilt)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
RNase3 domain-containing proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:VDAG_00471Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVerticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137) (Verticillium wilt)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri498257 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesHypocreomycetidaeGlomerellalesPlectosphaerellaceaeVerticillium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001611 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
27337.EGY13789

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini154 – 336Helicase ATP-bindingInterPro annotationAdd BLAST183
Domaini477 – 638Helicase C-terminalInterPro annotationAdd BLAST162
Domaini669 – 758Dicer dsRNA-binding foldInterPro annotationAdd BLAST90
Domaini1072 – 1221RNase IIIInterPro annotationAdd BLAST150
Domaini1272 – 1431RNase IIIInterPro annotationAdd BLAST160

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the helicase family. Dicer subfamily.PROSITE-ProRule annotation

Phylogenomic databases

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
G2WQ29

KEGG Orthology (KO)

More...
KOi
K11592

Identification of Orthologs from Complete Genome Data

More...
OMAi
FNMYVQT

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1520.10, 2 hits
3.30.160.380, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03368 Dicer_dimer, 1 hit
PF00271 Helicase_C, 1 hit
PF04851 ResIII, 1 hit
PF00636 Ribonuclease_3, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00535 RIBOc, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G2WQ29-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTDELSVGL DATGISILAD GPENISSSTS TSTTGKEDGY LCINRFTQNT
60 70 80 90 100
ATTQDNQSRD SDDDEDDCGS HDEADEDSDE RQYSMTPERP HKITEKKRAD
110 120 130 140 150
HAAFHDWLQS NSSEIAQSTP QPAQNLNHTS TALMVRESEN RKIIENPREY
160 170 180 190 200
QIELFERAKR KNIIAVLPTG SGKTLIAALL LRHTLEQETA DRRAGKPKRI
210 220 230 240 250
AFFLVEKVAL ALQQHAVLEC NLEFPIDRVC GDMVRSDWIK ESWMKRWDDN
260 270 280 290 300
MVMVCTAAIL QQCLARSFIR MDQINLLVFD EAHHAKGNHP YARIIKDYYI
310 320 330 340 350
TEPDKERRPK IFGMTASPVD ALTDVKIAAA QLEGLLHSEI ATIEEDSVSF
360 370 380 390 400
KQIQKEVVEQ DCKYPALEPP FTTNLHKKIQ EQVRYNKNFA KALSNSLEMS
410 420 430 440 450
SSLGSWCVDR FWQIFLTEET LARLAAQTAQ DNIFADRAEK ERVAIEEVRN
460 470 480 490 500
IIKQHQFLPI TKTLQDLSSK VLCLLGQLEL RFSAPTDHKC IIFVEKRNTA
510 520 530 540 550
MILAHLLSLP GIGPLYLKPA ALVGNPSDNS PLAMSYKEQV MTITKFRRGE
560 570 580 590 600
YNCLLATSVA EEGIDIADCN IVIRFDLFNS VIQYIQSKGR ARHLNSEYIC
610 620 630 640 650
MAELGNGKHT RAKIQANYDL SLIRQFCSTL PEDRKIVGWD PEAALHHGER
660 670 680 690 700
DHKFHIVPST GAKLTWTGSL VVLSNFASSL QVNDETLSPS YMVSLIGSEY
710 720 730 740 750
ICEVQLPSKS PILSVSGTLQ KNKAEARCSA AFEMCMKLIK GGFISSHLQP
760 770 780 790 800
TFTRKLPAMR NARLAISSKK RERYNMRVKP EVWSRRGPAS SLFLTVLKLR
810 820 830 840 850
TPGALNRPSQ PLALLTREAL PELPGVPLFF GNCGRSIAEV VSVAKPMHLD
860 870 880 890 900
EVRLDSLRVF TLRIFKDVFS KVYDSQVADL PYFLAPAAHD HSHEFSPNED
910 920 930 940 950
PGSLIDWSHL LSTKEVEYLP WDEDHSPSFY QSKFVIDPYT GSRKLFLRGI
960 970 980 990 1000
RTDLKPTDLV PDGVPEPTFR LWKDVEHTIK EYSISLWAKS RARRAGEWLD
1010 1020 1030 1040 1050
TQPVVEAELV SLRRNLLDEF ADSKHEGSRV CYVILQPLQI STLPVEVVAM
1060 1070 1080 1090 1100
AYNFPAIIHR IESNMIALDA CRMLNLRVRP DLALEAMTKD SSNSEEHDQE
1110 1120 1130 1140 1150
KIDFQAGMGN NYERLEFLGD CFLKMATTIA LFTRIPDSNE FECHVERMLL
1160 1170 1180 1190 1200
ICNQNLFNVA LKKNLQEYIR SKQFDRRSWY PQGLKQKAGK AQGAQNSHSL
1210 1220 1230 1240 1250
ADKSIADVCE AIIGASYLSY TDEGNFDMAV RAVTAVVRNK NHDMKSYEDY
1260 1270 1280 1290 1300
YKAFKMPIWQ AAEPSAVQME ASLQIKEQMG YEFKSPALLR SAFKHPSYPR
1310 1320 1330 1340 1350
QFESVPNYQR LEFLGDALLD MVCVDFLFRK FPDADPQWLT EHKMAMVSNH
1360 1370 1380 1390 1400
FLGSLSVELG FYRRVLHFNS IMANQIKDYV DALTHARQEA EAVAQISGTV
1410 1420 1430 1440 1450
SRDYWLNVKH PPKFLSDVVE AYIGAIFVDS GYDYGQVQAF FEKHIRPFFA
1460 1470 1480 1490 1500
DMALYDSFAS SHPVTTLARM MQQDFGCQDW RLLVSELPPS CEDGGAAAIT
1510 1520 1530 1540 1550
ETEVICGFMV HGRILLHAKS SSGRYAKVGA AKRAVEKLMG LGNDKEVFRT
1560
DFGCDCDCEG QAI
Length:1,563
Mass (Da):176,689
Last modified:November 16, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC9B7A5D5701FD146
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DS572695 Genomic DNA Translation: EGY13789.1

NCBI Reference Sequences

More...
RefSeqi
XP_009650143.1, XM_009651848.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
EGY13789; EGY13789; VDAG_00471

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
20701934

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vda:VDAG_00471

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS572695 Genomic DNA Translation: EGY13789.1
RefSeqiXP_009650143.1, XM_009651848.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

STRINGi27337.EGY13789

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiEGY13789; EGY13789; VDAG_00471
GeneIDi20701934
KEGGivda:VDAG_00471

Phylogenomic databases

InParanoidiG2WQ29
KOiK11592
OMAiFNMYVQT

Family and domain databases

CDDicd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits
Gene3Di1.10.1520.10, 2 hits
3.30.160.380, 1 hit
InterProiView protein in InterPro
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
PfamiView protein in Pfam
PF03368 Dicer_dimer, 1 hit
PF00271 Helicase_C, 1 hit
PF04851 ResIII, 1 hit
PF00636 Ribonuclease_3, 2 hits
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00535 RIBOc, 2 hits
SUPFAMiSSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits
PROSITEiView protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG2WQ29_VERDV
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G2WQ29
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: April 10, 2019
This is version 39 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again