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Protein

ATP-dependent RNA helicase DeaD

Gene

deaD

Organism
Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.UniRule annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationImported, Hydrolase, RNA-bindingUniRule annotation
Biological processStress responseUniRule annotation
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBAPH1005090:G1H03-379-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase DeaDUniRule annotation (EC:3.6.4.13UniRule annotation)
Alternative name(s):
Cold-shock DEAD box protein AUniRule annotation
Gene namesi
Name:deaDUniRule annotationImported
ORF Names:BAKON_375Imported
OrganismiBuchnera aphidicola str. Ak (Acyrthosiphon kondoi)Imported
Taxonomic identifieri1005090 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesErwiniaceaeBuchnera
Proteomesi
  • UP000001269 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi1005090.BAKON_375

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 34Q_MOTIFInterPro annotationAdd BLAST29
Domaini37 – 208Helicase ATP-bindingInterPro annotationAdd BLAST172
Domaini231 – 378Helicase C-terminalInterPro annotationAdd BLAST148

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi6 – 34Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. DeaD subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C1J Bacteria
COG0513 LUCA
KOiK05592
OrthoDBiPOG091H01ST

Family and domain databases

CDDicd00079 HELICc, 1 hit
cd12499 RRM_EcCsdA_like, 1 hit
Gene3Di3.30.70.330, 1 hit
HAMAPiMF_00964 DEAD_helicase_DeaD, 1 hit
InterProiView protein in InterPro
IPR034415 CsdA_RRM
IPR005580 DbpA/CsdA_RNA-bd_dom
IPR011545 DEAD/DEAH_box_helicase_dom
IPR028618 DEAD_helicase_DeaD
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF03880 DbpA, 1 hit
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

G2LN80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTHIESTFSF LGLNPFIIQS LNEMGYVKPS PIQASCIPLL LEGRDVLGMA
60 70 80 90 100
QTGSGKTAAF SLPLLHNLNI NLKAPQILVL APTRELAVQV AEAFSDFSKY
110 120 130 140 150
MIGIHVLPLY GGQRYELQLR ALRQGPQIVV GTPGRLLDHL KRGTLNLSNL
160 170 180 190 200
HGLVLDEADE MLRMGFIEDV ETIMAQIPKE HQTALFSATM PEAIRRISKR
210 220 230 240 250
FMKNPQEIKI QSNITTRPDI KQSYWMVYGR KTDALIRFLE VEDFSATIIF
260 270 280 290 300
VRTKNATLEV SEALERNGYN SAALNGDMNQ ALREQTLERL KNGRLDILIA
310 320 330 340 350
TDVAARGLDV DRISFVINYD IPMDSESYVH RIGRTGRAGR AGRALLFVEN
360 370 380 390 400
RERRLLRNIE RTIKQSIPEV QLPKIELLCQ RRLEQFAKKV QQQLESRDLD
410 420 430 440 450
EYSALLDKLY STDDLDIKTL AAALLKMAQG ERSLIIKPDL IKHQPRDLSF
460 470 480 490 500
KDNRRREDIR NIRTRRERRD NKDIDLYRIE VGRNDGVEVR HIVGAIANEG
510 520 530 540 550
NMHSRNIGNI KLFSSYSTIE LPKGISKDLL QSFIRTRILN KPINMKLLRD
560 570 580 590 600
SRNYETKTLN RSTFNRDKNS NRRISENSLN KSHTSKKNEL KPSFSRRRNV
Length:600
Mass (Da):68,708
Last modified:November 16, 2011 - v1
Checksum:i995AADF3A423C10B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002645 Genomic DNA Translation: AEO08718.1
RefSeqiWP_014499518.1, NC_017256.1

Genome annotation databases

EnsemblBacteriaiAEO08718; AEO08718; BAKON_375
KEGGibak:BAKON_375
PATRICifig|1005090.4.peg.368

Similar proteinsi

Entry informationi

Entry nameiG2LN80_9GAMM
AccessioniPrimary (citable) accession number: G2LN80
Entry historyiIntegrated into UniProtKB/TrEMBL: November 16, 2011
Last sequence update: November 16, 2011
Last modified: March 28, 2018
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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