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Entry version 41 (07 Oct 2020)
Sequence version 2 (11 Dec 2019)
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Protein

60S ribosomal protein L9

Gene
N/A
Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
60S ribosomal protein L9ARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryctolagus cuniculus (Rabbit)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9986 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001811 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSOCUG00000009091, Expressed in left lung and 17 other tissues
ENSOCUG00000027002, Expressed in left lung and 15 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
9986.ENSOCUP00000007851
9986.ENSOCUP00000021633

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein Data Bank in Europe - Knowledge Base

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PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini12 – 85Ribosomal_L6InterPro annotationAdd BLAST74
Domaini99 – 178Ribosomal_L6InterPro annotationAdd BLAST80

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG3255, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00390000015224

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_065464_0_2_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
G1SWI6

KEGG Orthology (KO)

More...
KOi
K02940

Identification of Orthologs from Complete Genome Data

More...
OMAi
VFQDGIY

Database of Orthologous Groups

More...
OrthoDBi
1408258at2759

TreeFam database of animal gene trees

More...
TreeFami
TF300033

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.90.930.12, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000702, Ribosomal_L6
IPR020040, Ribosomal_L6_a/b-dom
IPR036789, Ribosomal_L6_a/b-dom_sf
IPR002359, Ribosomal_L6_CS2

The PANTHER Classification System

More...
PANTHERi
PTHR11655, PTHR11655, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00347, Ribosomal_L6, 2 hits

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF002162, Ribosomal_L6, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56053, SSF56053, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00700, RIBOSOMAL_L6_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G1SWI6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKTILSNQTV DIPENVDISL KGRTVIVKGP RGTLRRDFNH INVELSLLGK
60 70 80 90 100
KKKRLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP
110 120 130 140 150
INVVIQENGS LVEIRNFLGE KYIRRVRMRP GVACSVSQAQ KDELVLEGND
160 170 180 190
IELVSNSAAL IQQATTVKNK DIRKFLDGIY VSEKGTVQQA DE
Length:192
Mass (Da):21,835
Last modified:December 11, 2019 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9B73424F42F49AA0
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AAGW02010646 Genomic DNA No translation available.

NCBI Reference Sequences

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RefSeqi
XP_002709438.1, XM_002709392.3

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSOCUT00000009088; ENSOCUP00000007851; ENSOCUG00000009091
ENSOCUT00000027643; ENSOCUP00000021633; ENSOCUG00000027002

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
108175358

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ocu:108175358

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAGW02010646 Genomic DNA No translation available.
RefSeqiXP_002709438.1, XM_002709392.3

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3JAGelectron microscopy3.65H1-190[»]
3JAHelectron microscopy3.45H1-190[»]
3JAIelectron microscopy3.65H1-190[»]
5LZSelectron microscopy3.31H1-192[»]
5LZTelectron microscopy3.65H1-192[»]
5LZUelectron microscopy3.75H1-192[»]
5LZVelectron microscopy3.35H1-192[»]
5LZWelectron microscopy3.53H1-192[»]
5LZXelectron microscopy3.67H1-192[»]
5LZYelectron microscopy3.99H1-192[»]
5LZZelectron microscopy3.47H1-192[»]
6D90electron microscopy3.20H1-192[»]
6D9Jelectron microscopy3.20H1-192[»]
6FTGelectron microscopy9.10H1-190[»]
6FTIelectron microscopy4.20H1-190[»]
6FTJelectron microscopy4.70H1-190[»]
6HCFelectron microscopy3.90H31-192[»]
6HCJelectron microscopy3.80H31-192[»]
6HCMelectron microscopy6.80H31-192[»]
6HCQelectron microscopy6.50H31-192[»]
6MTBelectron microscopy3.60H1-190[»]
6MTCelectron microscopy3.40H1-190[»]
6MTDelectron microscopy3.30H1-190[»]
6MTEelectron microscopy3.40H1-190[»]
6P5Ielectron microscopy3.10AH1-192[»]
6P5Jelectron microscopy3.10AH1-192[»]
6P5Kelectron microscopy3.10AH1-192[»]
6P5Nelectron microscopy3.20AH1-192[»]
6R5Qelectron microscopy3.00H1-190[»]
6R6Gelectron microscopy3.70H1-190[»]
6R6Pelectron microscopy3.10H1-190[»]
6R7Qelectron microscopy3.90H1-190[»]
6SGCelectron microscopy2.80H21-192[»]
6T59electron microscopy3.11H31-192[»]
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi9986.ENSOCUP00000007851
9986.ENSOCUP00000021633

Genome annotation databases

EnsembliENSOCUT00000009088; ENSOCUP00000007851; ENSOCUG00000009091
ENSOCUT00000027643; ENSOCUP00000021633; ENSOCUG00000027002
GeneIDi108175358
KEGGiocu:108175358

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
6133

Phylogenomic databases

eggNOGiKOG3255, Eukaryota
GeneTreeiENSGT00390000015224
HOGENOMiCLU_065464_0_2_1
InParanoidiG1SWI6
KOiK02940
OMAiVFQDGIY
OrthoDBi1408258at2759
TreeFamiTF300033

Gene expression databases

BgeeiENSOCUG00000009091, Expressed in left lung and 17 other tissues
ENSOCUG00000027002, Expressed in left lung and 15 other tissues

Family and domain databases

Gene3Di3.90.930.12, 2 hits
InterProiView protein in InterPro
IPR000702, Ribosomal_L6
IPR020040, Ribosomal_L6_a/b-dom
IPR036789, Ribosomal_L6_a/b-dom_sf
IPR002359, Ribosomal_L6_CS2
PANTHERiPTHR11655, PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347, Ribosomal_L6, 2 hits
PIRSFiPIRSF002162, Ribosomal_L6, 1 hit
SUPFAMiSSF56053, SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700, RIBOSOMAL_L6_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG1SWI6_RABIT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G1SWI6
Secondary accession number(s): G1TX33
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: December 11, 2019
Last modified: October 7, 2020
This is version 41 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Reference proteomeImported
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