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Entry version 57 (12 Aug 2020)
Sequence version 2 (16 Nov 2011)
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Protein
Submitted name:

AT-rich interaction domain 1B

Gene

ARID1B

Organism
Meleagris gallopavo (Wild turkey)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
AT-rich interaction domain 1BImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ARID1BImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMeleagris gallopavo (Wild turkey)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9103 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaeMeleagridinaeMeleagris
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001645 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

PhosphoproteinARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini433 – 524ARIDInterPro annotationAdd BLAST92

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 202DisorderedSequence analysisAdd BLAST202
Regioni285 – 426DisorderedSequence analysisAdd BLAST142
Regioni527 – 630DisorderedSequence analysisAdd BLAST104
Regioni664 – 737DisorderedSequence analysisAdd BLAST74
Regioni798 – 926DisorderedSequence analysisAdd BLAST129
Regioni961 – 988DisorderedSequence analysisAdd BLAST28
Regioni1201 – 1273DisorderedSequence analysisAdd BLAST73

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi32 – 68PolarSequence analysisAdd BLAST37
Compositional biasi84 – 99PolarSequence analysisAdd BLAST16
Compositional biasi111 – 131PolarSequence analysisAdd BLAST21
Compositional biasi140 – 202PolarSequence analysisAdd BLAST63
Compositional biasi285 – 326PolarSequence analysisAdd BLAST42
Compositional biasi341 – 355PolyampholyteSequence analysisAdd BLAST15
Compositional biasi356 – 371PolarSequence analysisAdd BLAST16
Compositional biasi381 – 425PolarSequence analysisAdd BLAST45
Compositional biasi539 – 574PolarSequence analysisAdd BLAST36
Compositional biasi613 – 629PolarSequence analysisAdd BLAST17
Compositional biasi664 – 700PolarSequence analysisAdd BLAST37
Compositional biasi817 – 843PolarSequence analysisAdd BLAST27
Compositional biasi876 – 906PolarSequence analysisAdd BLAST31
Compositional biasi961 – 976Pro-richSequence analysisAdd BLAST16
Compositional biasi1221 – 1239PolyampholyteSequence analysisAdd BLAST19
Compositional biasi1255 – 1271PolarSequence analysisAdd BLAST17

Phylogenomic databases

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000155634

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_000974_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
G1NJH9

Identification of Orthologs from Complete Genome Data

More...
OMAi
QMHPGMS

TreeFam database of animal gene trees

More...
TreeFami
TF320364

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.150.60, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR038040, ARID1B
IPR001606, ARID_dom
IPR036431, ARID_dom_sf
IPR016024, ARM-type_fold
IPR021906, BAF250/Osa
IPR033388, BAF250_C

The PANTHER Classification System

More...
PANTHERi
PTHR12656, PTHR12656, 2 hits
PTHR12656:SF11, PTHR12656:SF11, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01388, ARID, 1 hit
PF12031, BAF250_C, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00501, BRIGHT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46774, SSF46774, 1 hit
SSF48371, SSF48371, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51011, ARID, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G1NJH9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAPGKPNHED LNLIQQERPS SLPDLSGSID DLPTGTEATL SSAVSASGST
60 70 80 90 100
SSQGEQSNPA QSPFSPHASP HLSGIPGGPS PSPVGSPVGS NQSRSGPISP
110 120 130 140 150
ASIPGFMAGI QRNPQMSQYG PQQTGPSMSP HPSPGGQVHP GIGSFQQSNS
160 170 180 190 200
SGTYGPQMSQ YGPQGNYSRP PTYSGVPNTS YSGPGPGMGI NANSQMHGQG
210 220 230 240 250
PSQPCGTMPL GRMPSTGMQS RPFPGNMSSM TPNSPGMSQQ GGPGMGPPMP
260 270 280 290 300
TVNRKAQEAA AAVMQAAANS AQSRQGNFPA MNQSGIMGSS SPYTQPMNNS
310 320 330 340 350
SGLMNPQAPP YSMAPNMVNS STAPMGLADM MTPGESKLPL PLKADGKEEG
360 370 380 390 400
APQPESKSKD SYSSQGISQP PTPGNLPVPS PMSPSSASIS SFHGDESDSI
410 420 430 440 450
SSPGWPKTPS SPKSSSSTTT GEKITKVYEL GNEPERKMWV DRYLTFMEER
460 470 480 490 500
GTPVASLPAV GKKPLDLFRL YVCVKEIGGL AQVNKNKKWR ELATTLNVGT
510 520 530 540 550
SSSAASSLKK QYIQYLFAFE CKIERGEEPP PEVFSTGDTK KQPKIQPPSP
560 570 580 590 600
ANSGSLQGPQ TPQSTGSNSM TEVPGDLKPP TPASTPHGQM TPMQGGRNSA
610 620 630 640 650
VSVHDPFSDV SESAFPKRNS MTPNAPYQQG INMPDMMGRM PYEPNKDPFG
660 670 680 690 700
GMRKAVPGSN EPFMTPGQMP NSGIQEMYNQ SPSGAMSNMS MSQRQQFSYG
710 720 730 740 750
SGYDRRHEPY GQQYPGQGPP SGQPPYGGHQ PGMYPQQQNY KRHMDGMYGP
760 770 780 790 800
PAKRHEGDMY NMQYGNQQQE MYNQYSNAYS GPDRRPMQGQ YPYPYNRERM
810 820 830 840 850
QGPGQMQQHG IPPQMIGGPM QSSSSTEGPQ QNMWPTRNDM PYPYQNRQGP
860 870 880 890 900
GGPAQAPPYP GMNRTDDMMV PDQRINHESQ WPSHVNQRQP SYMSSSASMQ
910 920 930 940 950
PITRPPQSSY QTPPSMPNHI SRAPSPASFQ RSLENRMSPS KSPFLPSMKM
960 970 980 990 1000
QKVIPTVPVS QVTGPPPQPP PIRREITFPP GSVEASQPVL KPRRKITSKD
1010 1020 1030 1040 1050
IVTPEAWRVM MSLKSGLLAE STWALDTINI LLYDDSTVAT FNLSQLSGFL
1060 1070 1080 1090 1100
ELLVEYFRKC LIDIFGILME YEVGDPGHKA LDHKSAKKDD SLSLAEDTGK
1110 1120 1130 1140 1150
EENDECIDCF DEEEEEGDDE NVEGEEKSIV FSTPGAIADP SERPKQASKF
1160 1170 1180 1190 1200
DKLPIKIVKK NNLFVVDRSD KLGRVQEFDS GLLHWQLGGG DTTEHIQTHF
1210 1220 1230 1240 1250
ESKMEIPPRR KAPPPSNSPS KKKDLEGKGE FEEQQEKSIT ATIDDVLSAR
1260 1270 1280 1290 1300
PGALPEDSNS GSQTESSKFP FGIHQAKSHR NIKLLEDEPR SRDETPLCTI
1310 1320 1330 1340 1350
THWQDSLAKR CICVSNIVRS LSFVPGNDTE MSKHPGLVLI LGKLILLHHE
1360 1370 1380 1390 1400
HPERKRAPQT YEKEEEEDKG VACSKDEWWW DCLEVLRDNT LVTLANISGQ
1410 1420 1430 1440 1450
LDLSAYTESI CLPILDGLLH WMVCPSAEAQ DPFPTVGPNS VLSPQRLVLE
1460 1470 1480 1490 1500
TLCKLSIQDN NVDLILATPP FSRQEKLYAT LVRYVGDRKN PVCREMSMAL
1510 1520 1530 1540 1550
LSNLAQGDTL AARAIAVQKG SIGNLISFLE DGVTMAQYQQ SQHNLMHMQP
1560 1570 1580 1590 1600
PPLEPPSVDM MCRAAKALLA MARVDENRSE FLLHEGRLLD ISISAVLNSL
1610
VASVICDVLF QIGQL
Length:1,615
Mass (Da):175,689
Last modified:November 16, 2011 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i720E66017B053A46
GO

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMGAT00000014403; ENSMGAP00000013495; ENSMGAG00000012797

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsembliENSMGAT00000014403; ENSMGAP00000013495; ENSMGAG00000012797

Phylogenomic databases

GeneTreeiENSGT00940000155634
HOGENOMiCLU_000974_1_0_1
InParanoidiG1NJH9
OMAiQMHPGMS
TreeFamiTF320364

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040, ARID1B
IPR001606, ARID_dom
IPR036431, ARID_dom_sf
IPR016024, ARM-type_fold
IPR021906, BAF250/Osa
IPR033388, BAF250_C
PANTHERiPTHR12656, PTHR12656, 2 hits
PTHR12656:SF11, PTHR12656:SF11, 2 hits
PfamiView protein in Pfam
PF01388, ARID, 1 hit
PF12031, BAF250_C, 1 hit
SMARTiView protein in SMART
SM00501, BRIGHT, 1 hit
SUPFAMiSSF46774, SSF46774, 1 hit
SSF48371, SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS51011, ARID, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG1NJH9_MELGA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G1NJH9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: November 16, 2011
Last modified: August 12, 2020
This is version 57 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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