UniProtKB - G1KCR1 (G1KCR1_ANOCA)
Protein
Syndecan
Gene
SDC2
Organism
Anolis carolinensis (Green anole) (American chameleon)
Status
Functioni
Cell surface proteoglycan.UniRule annotation
GO - Molecular functioni
- identical protein binding Source: Ensembl
- PDZ domain binding Source: Ensembl
GO - Biological processi
- cell migration Source: GO_Central
- dendrite morphogenesis Source: GO_Central
- regulation of dendrite morphogenesis Source: Ensembl
Names & Taxonomyi
Protein namesi | Recommended name: SyndecanUniRule annotation |
Gene namesi | Name:SDC2Imported |
Organismi | Anolis carolinensis (Green anole) (American chameleon)Imported |
Taxonomic identifieri | 28377 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Lepidosauria › Squamata › Bifurcata › Unidentata › Episquamata › Toxicofera › Iguania › Dactyloidae › Anolis |
Proteomesi |
|
Subcellular locationi
Other locations
- Membrane UniRule annotation; Single-pass type I membrane protein UniRule annotation
Other locations
- cell surface Source: GO_Central
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 149 – 173 | HelicalSequence analysisAdd BLAST | 25 |
Keywords - Cellular componenti
MembranePTM / Processingi
Keywords - PTMi
Glycoprotein, Heparan sulfateUniRule annotationARBA annotation, ProteoglycanExpressioni
Gene expression databases
Bgeei | ENSACAG00000004304, Expressed in liver and 15 other tissues |
Interactioni
GO - Molecular functioni
- identical protein binding Source: Ensembl
- PDZ domain binding Source: Ensembl
Protein-protein interaction databases
STRINGi | 28377.ENSACAP00000004211 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 172 – 190 | 4.1mInterPro annotationAdd BLAST | 19 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 40 – 134 | DisorderedSequence analysisAdd BLAST | 95 | |
Regioni | 182 – 205 | DisorderedSequence analysisAdd BLAST | 24 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 85 – 104 | PolarSequence analysisAdd BLAST | 20 | |
Compositional biasi | 105 – 134 | PolyampholyteSequence analysisAdd BLAST | 30 |
Sequence similaritiesi
Keywords - Domaini
Transmembrane, Transmembrane helixSequence analysisARBA annotationPhylogenomic databases
eggNOGi | ENOG502S3JC, Eukaryota |
GeneTreei | ENSGT00940000157222 |
HOGENOMi | CLU_046599_2_0_1 |
InParanoidi | G1KCR1 |
OMAi | MNPAEEN |
TreeFami | TF320463 |
Family and domain databases
InterProi | View protein in InterPro IPR003585, Neurexin-like IPR001050, Syndecan IPR031201, Syndecan-2 IPR027789, Syndecan/Neurexin_dom IPR030479, Syndecan_CS |
PANTHERi | PTHR10915, PTHR10915, 1 hit PTHR10915:SF6, PTHR10915:SF6, 1 hit |
Pfami | View protein in Pfam PF01034, Syndecan, 1 hit |
SMARTi | View protein in SMART SM00294, 4.1m, 1 hit |
PROSITEi | View protein in PROSITE PS00964, SYNDECAN, 1 hit |
i Sequence
Sequence statusi: Complete.
G1KCR1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
RCTTLAVLDI FSEQFSSFIR AALTSDKDLY LDNSSIEEAS GVYPIDDDDY
60 70 80 90 100
TSGSGSGDEE EDENTMIEPT PRMLPERPVI PVSDSPRTER TTQKTQTKVP
110 120 130 140 150
TQTKSSEELD QKKILKPEAE NKNDKSEPSE DTDVFTQKHS ENLFQRTEVL
160 170 180 190 200
AAVIAGGVIG FLFAIFLILL LVYRMRKKDE GSYDLGERKP SSAAYQKAPT
KEFYA
Genome annotation databases
Ensembli | ENSACAT00000004310; ENSACAP00000004211; ENSACAG00000004304 |
Similar proteinsi
Cross-referencesi
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 28377.ENSACAP00000004211 |
Genome annotation databases
Ensembli | ENSACAT00000004310; ENSACAP00000004211; ENSACAG00000004304 |
Phylogenomic databases
eggNOGi | ENOG502S3JC, Eukaryota |
GeneTreei | ENSGT00940000157222 |
HOGENOMi | CLU_046599_2_0_1 |
InParanoidi | G1KCR1 |
OMAi | MNPAEEN |
TreeFami | TF320463 |
Gene expression databases
Bgeei | ENSACAG00000004304, Expressed in liver and 15 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR003585, Neurexin-like IPR001050, Syndecan IPR031201, Syndecan-2 IPR027789, Syndecan/Neurexin_dom IPR030479, Syndecan_CS |
PANTHERi | PTHR10915, PTHR10915, 1 hit PTHR10915:SF6, PTHR10915:SF6, 1 hit |
Pfami | View protein in Pfam PF01034, Syndecan, 1 hit |
SMARTi | View protein in SMART SM00294, 4.1m, 1 hit |
PROSITEi | View protein in PROSITE PS00964, SYNDECAN, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | G1KCR1_ANOCA | |
Accessioni | G1KCR1Primary (citable) accession number: G1KCR1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | October 19, 2011 |
Last sequence update: | October 19, 2011 | |
Last modified: | August 12, 2020 | |
This is version 48 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |