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Entry version 29 (16 Jan 2019)
Sequence version 1 (19 Oct 2011)
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Protein
Submitted name:

Pol II transcription elongation factor

Gene

RTG_02366

Organism
Rhodosporidium toruloides (strain ATCC 204091 / IIP 30 / MTCC 1151) (Yeast) (Rhodotorula glutinis (strain ATCC 204091))
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionElongation factorImported
Biological processProtein biosynthesis

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Pol II transcription elongation factorImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:RTG_02366Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRhodosporidium toruloides (strain ATCC 204091 / IIP 30 / MTCC 1151) (Yeast) (Rhodotorula glutinis (strain ATCC 204091))Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1001064 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaPucciniomycotinaMicrobotryomycetesSporidiobolalesSporidiobolaceaeRhodotorula

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1189 – 1209Sequence analysisAdd BLAST21
Coiled coili1287 – 1307Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
G0T089

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR006849 Elp1

The PANTHER Classification System

More...
PANTHERi
PTHR12747 PTHR12747, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04762 IKI3, 1 hit

PIRSF; a whole-protein classification database

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PIRSFi
PIRSF017233 IKAP, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G0T089-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRSISVLEAS FHPLSSSSST SPSPRAQDLV ATTTDAGTDT TYAVTLSSEE
60 70 80 90 100
GHEEVVVHVW RMPQVAEEPA TLLTSFLPPP PPPTLPSSQP FIVSLKYLPE
110 120 130 140 150
DDALALVLAN GDVEQVFLEG GVREAKVSST SLAKRENVGT FDYGIKAASW
160 170 180 190 200
SPDEELLAIV TGNDQLLVLA KTFDPLSEQP LHTSSFGADA PVSVGWGHKS
210 220 230 240 250
TQFHGSLGKS AAAAAAKQNP LDADWLESAR DDGLTRIAWR GDSAWFAVNS
260 270 280 290 300
LERAPPRSDL ADGEERRVRR IRIYSRLGEH SSTSEPVPGL EGSLAWIPSG
310 320 330 340 350
EIIASTQRKV VVSPEGESRD ELQVMFFERN GLRRYEFGLR ERRAEAISVR
360 370 380 390 400
ELGWNAASDL LAVWIERDAE EAGATPSHAV QLWHRSNYYW YLKAELAPRL
410 420 430 440 450
SLSRRLQTVV WHPEKAQEIE LIAADGLERY SLCWETFSSQ RPVPLDDGTV
460 470 480 490 500
AVVDGVDIKL TPFRLQNVPP PMSSLVLRSS RPQTPLPPAH ISFSASPSPS
510 520 530 540 550
SPLRFAVLYP DSFLEFYSWT LPLTGNAQRN AHAGLSDPVL ECSLQLDPNA
560 570 580 590 600
TRQRCVARQC AVYGDKVAVL RSLQGEHAQD EVVIVDGRQG ETRVIKVLEG
610 620 630 640 650
ARKIAATQER EKQDGGEGNG EEDVDGFVLV TQSGEVLEIP AAGSDDFASP
660 670 680 690 700
SSSLSPFPEF CQTIQHVRIP PSSPSSTFCL PTLIGLAASG RLYSSSRLLA
710 720 730 740 750
SDATSFTLTS DFLIYTTFSH EASFIPLSTL STVPTADFTE SFARRAAGSA
760 770 780 790 800
ASGPSETIKR AVERGSRIVT VVPSSTTLIL QMPRGNLETI CPRPLVLRVV
810 820 830 840 850
RSLLDSRRYR AAFLLCRRHR IDLNILHDHD PEAFVANLHD FVSQVKDIDY
860 870 880 890 900
LNLFLSGLKD EDVTKTMYKP LVAGGVESFD PSTKVNTICR LVRDDLEQRD
910 920 930 940 950
VFHFANTILT SYVRQRPPAY EDALNLLVQL KAKDAERAED AVKYIIFLSD
960 970 980 990 1000
SNKLFDLALG MYDFPLVLMI AQQSQKDPRE YLPFLRALRS LPPFLQCYKI
1010 1020 1030 1040 1050
DDHLGRYASA LRNLSKAGDE HFDEALEYTK KHGLFEVALR AYEDDKEKYE
1060 1070 1080 1090 1100
MVLSANAEHL FDRSNYFEAA LLFTLAAQPE KAMLAYQRAR AWQELFTLAL
1110 1120 1130 1140 1150
TSGTVDEEGI KELAADVADD LSGKRRYGDA AKVLLDYGKD VDAAVAVLCE
1160 1170 1180 1190 1200
GSLHAEAMRV TALHGRRDLV NSRIKTSTLE LQERLCEDCS DLTEQVQKQL
1210 1220 1230 1240 1250
DRLAELRTKR DQNPYFYYCV DDPTAAFENV EIAPDGMSDA GTAFTRYTVN
1260 1270 1280 1290 1300
PTTLASTSRR TSKTSGSRRR AALKKAAGKK GTVYEEMYLL NSLKKTAESR
1310 1320 1330 1340 1350
LAELQRETAA LLPVLLILSS AEHRTAAIDL QSNVTSFETF LSTAIDSIWS
1360 1370 1380 1390 1400
PLEQSWRAES IEEQRIKDTG DPMLLAEWEQ RPKPVEGEEE TRRVERPVLA
1410
REKWRIGLLD AQAK
Length:1,414
Mass (Da):156,732
Last modified:October 19, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD97AC7C30A6C644C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AEVR02000005 Genomic DNA Translation: EGU11591.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
EGU11591; EGU11591; RTG_02366

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEVR02000005 Genomic DNA Translation: EGU11591.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiEGU11591; EGU11591; RTG_02366

Phylogenomic databases

InParanoidiG0T089

Family and domain databases

InterProiView protein in InterPro
IPR006849 Elp1
PANTHERiPTHR12747 PTHR12747, 1 hit
PfamiView protein in Pfam
PF04762 IKI3, 1 hit
PIRSFiPIRSF017233 IKAP, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG0T089_RHOT2
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G0T089
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 16, 2019
This is version 29 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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