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Entry version 52 (16 Jan 2019)
Sequence version 1 (19 Oct 2011)
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Protein
Submitted name:

CBN-DCR-1 protein

Gene

Cbn-dcr-1

Organism
Caenorhabditis brenneri (Nematode worm)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation
Biological processRNA-mediated gene silencingSAAS annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
CBN-DCR-1 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Cbn-dcr-1Imported
ORF Names:CAEBREN_12148Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis brenneri (Nematode worm)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri135651 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008068 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
135651.CBN12148

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini20 – 202Helicase ATP-bindingInterPro annotationAdd BLAST183
Domaini372 – 543Helicase C-terminalInterPro annotationAdd BLAST172
Domaini571 – 667Dicer dsRNA-binding foldInterPro annotationAdd BLAST97
Domaini846 – 998PAZInterPro annotationAdd BLAST153
Domaini1396 – 1605RNase IIIInterPro annotationAdd BLAST210
Domaini1659 – 1821RNase IIIInterPro annotationAdd BLAST163
Domaini1849 – 1912DRBMInterPro annotationAdd BLAST64

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1059 – 1096Sequence analysisAdd BLAST38
Coiled coili1264 – 1290Sequence analysisAdd BLAST27
Coiled coili1314 – 1334Sequence analysisAdd BLAST21

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the helicase family. Dicer subfamily.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0701 Eukaryota
COG0571 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
G0N0F3

Identification of Orthologs from Complete Genome Data

More...
OMAi
PKPDQPC

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00048 DSRM, 1 hit
cd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1520.10, 1 hit
3.30.160.380, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_00104 RNase_III, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR014720 dsRBD_dom
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR003100 PAZ_dom
IPR036085 PAZ_dom_sf
IPR011907 RNase_III
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03368 Dicer_dimer, 1 hit
PF00271 Helicase_C, 1 hit
PF02170 PAZ, 1 hit
PF04851 ResIII, 1 hit
PF00636 Ribonuclease_3, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00949 PAZ, 1 hit
SM00535 RIBOc, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF101690 SSF101690, 1 hit
SSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS50137 DS_RBD, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50821 PAZ, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

G0N0F3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVRMRPDLQC FNPRDYQVEL LDKASKKNTI VQLGTGSGKT FIAVLLLKEY
60 70 80 90 100
GVQMFAPLDQ GGKRAFFIVE KVNLVEQQAK HIEVHTSFKV GQVHGQTSSE
110 120 130 140 150
LWKSPVACEK FMKENHVVVI TAQCLLDFIN HAFIKIQDTC VLIFDECHHA
160 170 180 190 200
LGSKHPYRLI MTKYKELKKA GEPVPRVLGL TASLIKEKVA PEKLSEQLVK
210 220 230 240 250
LESVLDSVIE TASDLVSLTK YGAKPYEAIV LCRDFETDKL GVPNYDKIMN
260 270 280 290 300
LLYETDKFIR ETTLFHPDLD MDPRSYAREA LKATKSVFQQ LGPWAAWKIS
310 320 330 340 350
QMFEKDLMKH INLQQLPEKA TLFLNLAKTT IITVKRLLEP EMRQIKSLNE
360 370 380 390 400
LERYVPHRII RLFQVFEMFN PDFQKQRMAL EKTEHLSAII FVNQRYIAYS
410 420 430 440 450
LHIMMRAIRQ WEPKFKFLNT DFVVGASGPN MANSNNQGLQ KRQTDALRKF
460 470 480 490 500
HRGDLNVLIA TSVLEEGVDV KQCNVVIKFD RPTDMRSYVQ SKGRARKAGS
510 520 530 540 550
RYVVLVDQKD TSACDSDLKD FQQIEKILLS RHRTVNNPTE DDSLTDLGDV
560 570 580 590 600
DDLMAPYVVE KTGATIKMSN AIALVNRYCA KLPSDIFTRL VPNSTIIPVE
610 620 630 640 650
DHGVTKYCAE LLLPINSPIK HAIILKDPMP NKKAAQMAVA LEACRQLHLK
660 670 680 690 700
GELDDNLLPK GRESIAKLLE QMDDEPDEYA PGMAAKVGSS KRKQLYDKKI
710 720 730 740 750
ARALNESHVE PEKECYIYAL ELERLRDSEP SPNTRRRRFE DPKEYEYCFG
760 770 780 790 800
FLSTKEIPKI PPFPLFLRQG NMKVRLTLAP QKTTVTKEQL EEIQYFHNYL
810 820 830 840 850
FTQVLQMCKT GNLEFDVTAN APLNTLIVPL NKSKEEGYSI NMKYVSGVVA
860 870 880 890 900
NMENMPRVPT DEVRRKFKFD PENYKDAVVM PWYRNMEQPA FYYVAEILTD
910 920 930 940 950
LRPSSQFPDH NFTTFNEYFI KKYNLEIYDQ EQSLLDVDFT SNRLNLLLPR
960 970 980 990 1000
IQSQARRARS FSGSSTSSAP PTPSESRESG PHPSQRQILI PELMDVHPIS
1010 1020 1030 1040 1050
ATLWNVIAAL PSIFYRINQL LLSDELRETI LVKAFGKGSE ETKLKDSFEW
1060 1070 1080 1090 1100
SCMTYTATYE EKQSVIVKKI QQLRDLNQKK LDAQQEKEKK EETKTDGEEW
1110 1120 1130 1140 1150
TIGVWDPEDA VRSGVDVDMF NNKENMDGED QETVGLSQGL HDGNISDEDD
1160 1170 1180 1190 1200
DLPFVMHDYT ARLNSHNLNG NGNGIQQASW EDTVEIVPSG WGDLDGVGEV
1210 1220 1230 1240 1250
DAIPFQIIGG SGGLNVQALM EDVGRVFDPK TPEKSDPAVP SATTTAASAS
1260 1270 1280 1290 1300
STSTASSTVS KLTKEELQRK KIQEEMLAKA QERLEALEIS EEKEKPRRLE
1310 1320 1330 1340 1350
ETVDLDEFGD DLPLEEEENQ IARAKTMDEE IEELKRGALE KHKIDNDTVK
1360 1370 1380 1390 1400
TDASSREKCE VLPIAAQDLQ PRPFSFEKES QTMHGRLLKE RDQEAISHVD
1410 1420 1430 1440 1450
SDVGMGVSPC LLLTALTTSN AADGMSLERF ETIGDSFLKF ATTDYLYHTL
1460 1470 1480 1490 1500
QDQHEGKLSF ARSKEVSNCN LYRLGKKLGI PQLIIANKFD AHDSWLPPCY
1510 1520 1530 1540 1550
IPTCNFKAPN TDDAEEKDIE MERLLNGETI EEKPQNKTGW DMELKDEAKT
1560 1570 1580 1590 1600
TTEKIETITF PKRTALVNED ISPLPYNLLT QQNISDKSIA DAMEALIGVH
1610 1620 1630 1640 1650
LLTLGPNPTL KVMSWMGLKV IQKDAVTDVA APLLRFIDTP TNPNASTIQL
1660 1670 1680 1690 1700
DNLWQQFQFA KLEEKIGYRF KERAYLVQAF THASYSNNRV TGCYQRLEFL
1710 1720 1730 1740 1750
GDAVLDYMIT RFLFEDVRQY SPGVLTDLRS ALVNNTIFAS LAVKYEFQKH
1760 1770 1780 1790 1800
FIAMCPGLHH MIEKFVQLCA DRNFDTNFNA EMYMVTTEEE IDEGHEEDVE
1810 1820 1830 1840 1850
VPKALGDVFE SVAGAIYLDS GRNLDTTWQV LFHMMRSTIE SCCANPPRSP
1860 1870 1880 1890 1900
IRELMELESS KARFSKMERI LETGKVRVTV DVGNNMRFTG MGRNYRIAKA
1910 1920
TAAKRALRYL HMIEVQRRQS PSDSPTQ
Length:1,927
Mass (Da):219,321
Last modified:October 19, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i942FDC017A9ED4D6
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GL379824 Genomic DNA Translation: EGT48937.1

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
CBN12148; CBN12148; WBGene00150873

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL379824 Genomic DNA Translation: EGT48937.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

STRINGi135651.CBN12148

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiCBN12148; CBN12148; WBGene00150873

Phylogenomic databases

eggNOGiKOG0701 Eukaryota
COG0571 LUCA
InParanoidiG0N0F3
OMAiPKPDQPC

Family and domain databases

CDDicd00048 DSRM, 1 hit
cd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits
Gene3Di1.10.1520.10, 1 hit
3.30.160.380, 1 hit
HAMAPiMF_00104 RNase_III, 1 hit
InterProiView protein in InterPro
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR014720 dsRBD_dom
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR003100 PAZ_dom
IPR036085 PAZ_dom_sf
IPR011907 RNase_III
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
PfamiView protein in Pfam
PF03368 Dicer_dimer, 1 hit
PF00271 Helicase_C, 1 hit
PF02170 PAZ, 1 hit
PF04851 ResIII, 1 hit
PF00636 Ribonuclease_3, 2 hits
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00949 PAZ, 1 hit
SM00535 RIBOc, 2 hits
SUPFAMiSSF101690 SSF101690, 1 hit
SSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits
PROSITEiView protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS50137 DS_RBD, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50821 PAZ, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiG0N0F3_CAEBE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: G0N0F3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 19, 2011
Last sequence update: October 19, 2011
Last modified: January 16, 2019
This is version 52 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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