UniProtKB - G0LM10 (G0LM10_HALWC)
Protein
30S ribosomal protein S13
Gene
rps13
Organism
Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23)
Status
Functioni
Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.UniRule annotation
GO - Molecular functioni
- rRNA binding Source: UniProtKB-UniRule
- structural constituent of ribosome Source: InterPro
GO - Biological processi
- translation Source: UniProtKB-UniRule
Keywordsi
Molecular function | Ribonucleoprotein, Ribosomal proteinUniRule annotationImportedARBA annotation, RNA-binding, rRNA-bindingUniRule annotation |
Names & Taxonomyi
Protein namesi | Recommended name: 30S ribosomal protein S13UniRule annotation |
Gene namesi | Name:rps13UniRule annotationImported Ordered Locus Names:Hqrw_3359Imported |
Organismi | Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23)Imported |
Taxonomic identifieri | 768065 [NCBI] |
Taxonomic lineagei | Archaea › Euryarchaeota › Stenosarchaea group › Halobacteria › Haloferacales › Haloferacaceae › Haloquadratum › |
Proteomesi |
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Interactioni
Subunit structurei
Part of the 30S ribosomal subunit.
Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.
UniRule annotationFamily & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 130 – 154 | DisorderedSequence analysisAdd BLAST | 25 |
Sequence similaritiesi
Phylogenomic databases
HOGENOMi | CLU_103849_0_0_2 |
OMAi | HKRGQKV |
OrthoDBi | 84219at2157 |
Family and domain databases
Gene3Di | 4.10.910.10, 1 hit |
HAMAPi | MF_01315, Ribosomal_S13_S18, 1 hit |
InterProi | View protein in InterPro IPR027437, 30s_Rbsml_prot_S13_C IPR001892, Ribosomal_S13 IPR010979, Ribosomal_S13-like_H2TH IPR019977, Ribosomal_S13_archaeal IPR018269, Ribosomal_S13_CS |
Pfami | View protein in Pfam PF00416, Ribosomal_S13, 1 hit |
PIRSFi | PIRSF002134, Ribosomal_S13, 1 hit |
SUPFAMi | SSF46946, SSF46946, 1 hit |
TIGRFAMsi | TIGR03629, uS13_arch, 1 hit |
PROSITEi | View protein in PROSITE PS00646, RIBOSOMAL_S13_1, 1 hit PS50159, RIBOSOMAL_S13_2, 1 hit |
i Sequence
Sequence statusi: Complete.
G0LM10-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSANNTQDDA AEEEDDDLQY FVRIGTTDLD GTKAVERSLT DMKGIGKRTA
60 70 80 90 100
RIITDVASVD RHATFGLLEE DEIDSITDAV ENLDDHIPGW MTNRREDFFS
110 120 130 140 150
GDTDHKTGAD LEEKRRHDVN RMKMIDSYKG VRHKRGQKVR GQRTKSTGRT
160 170
EGTIGVNVEA IKEEAAEAAE EEE
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | FR746099 Genomic DNA Translation: CCC41130.1 |
RefSeqi | WP_014556568.1, NC_017459.1 |
Genome annotation databases
EnsemblBacteriai | CCC41130; CCC41130; Hqrw_3359 |
GeneIDi | 12448168 |
KEGGi | hwc:Hqrw_3359 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | FR746099 Genomic DNA Translation: CCC41130.1 |
RefSeqi | WP_014556568.1, NC_017459.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
EnsemblBacteriai | CCC41130; CCC41130; Hqrw_3359 |
GeneIDi | 12448168 |
KEGGi | hwc:Hqrw_3359 |
Phylogenomic databases
HOGENOMi | CLU_103849_0_0_2 |
OMAi | HKRGQKV |
OrthoDBi | 84219at2157 |
Family and domain databases
Gene3Di | 4.10.910.10, 1 hit |
HAMAPi | MF_01315, Ribosomal_S13_S18, 1 hit |
InterProi | View protein in InterPro IPR027437, 30s_Rbsml_prot_S13_C IPR001892, Ribosomal_S13 IPR010979, Ribosomal_S13-like_H2TH IPR019977, Ribosomal_S13_archaeal IPR018269, Ribosomal_S13_CS |
Pfami | View protein in Pfam PF00416, Ribosomal_S13, 1 hit |
PIRSFi | PIRSF002134, Ribosomal_S13, 1 hit |
SUPFAMi | SSF46946, SSF46946, 1 hit |
TIGRFAMsi | TIGR03629, uS13_arch, 1 hit |
PROSITEi | View protein in PROSITE PS00646, RIBOSOMAL_S13_1, 1 hit PS50159, RIBOSOMAL_S13_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | G0LM10_HALWC | |
Accessioni | G0LM10Primary (citable) accession number: G0LM10 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | October 19, 2011 |
Last sequence update: | October 19, 2011 | |
Last modified: | December 2, 2020 | |
This is version 48 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |