UniProtKB - F9VNB1 (F9VNB1_SULTO)
Protein
Submitted name:
DNA photolyase
Gene
phr
Organism
Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii)
Status
Functioni
Cofactori
FADARBA annotation
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Binding sitei | 106 | FADCombined sources | 1 | |
Binding sitei | 221 | FADCombined sources | 1 | |
Binding sitei | 243 | FADCombined sources | 1 | |
Binding sitei | 247 | FADCombined sources | 1 | |
Binding sitei | 331 | FADCombined sources | 1 |
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 34 – 39 | FADCombined sources | 6 | |
Nucleotide bindingi | 43 – 45 | FADCombined sources | 3 | |
Nucleotide bindingi | 98 – 100 | FADCombined sources | 3 | |
Nucleotide bindingi | 214 – 217 | FADCombined sources | 4 | |
Nucleotide bindingi | 306 – 312 | FADCombined sources | 7 | |
Nucleotide bindingi | 340 – 349 | FADCombined sources | 10 |
GO - Molecular functioni
- deoxyribodipyrimidine photo-lyase activity Source: UniProtKB-EC
- nucleotide binding Source: UniProtKB-KW
GO - Biological processi
- protein-chromophore linkage Source: UniProtKB-KW
Keywordsi
Molecular function | LyaseImported |
Ligand | ChromophoreUniRule annotationARBA annotation, FADUniRule annotationCombined sourcesARBA annotation, Flavoprotein, Nucleotide-bindingCombined sources |
Enzyme and pathway databases
BioCyci | STOK273063:G1G3D-1016-MONOMER |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:phrImported Synonyms:ST0889Imported Ordered Locus Names:STK_08890Imported |
Organismi | Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (Sulfolobus tokodaii)Imported |
Taxonomic identifieri | 273063 [NCBI] |
Taxonomic lineagei | Archaea › Crenarchaeota › Thermoprotei › Sulfolobales › Sulfolobaceae › Sulfurisphaera › |
Proteomesi |
|
PTM / Processingi
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Disulfide bondi | 3 ↔ 26 | Combined sources |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 1 – 129 | Photolyase/cryptochrome alpha/betaInterPro annotationAdd BLAST | 129 |
Sequence similaritiesi
Belongs to the DNA photolyase family.UniRule annotation
Phylogenomic databases
eggNOGi | arCOG02840, Archaea |
OMAi | IWFRHGL |
OrthoDBi | 21461at2157 |
Family and domain databases
Gene3Di | 3.40.50.620, 1 hit |
InterProi | View protein in InterPro IPR036134, Crypto/Photolyase_FAD-like_sf IPR036155, Crypto/Photolyase_N_sf IPR005101, Cryptochr/Photolyase_FAD-bd IPR002081, Cryptochrome/DNA_photolyase_1 IPR018394, DNA_photolyase_1_CS_C IPR006050, DNA_photolyase_N IPR014729, Rossmann-like_a/b/a_fold |
Pfami | View protein in Pfam PF00875, DNA_photolyase, 1 hit PF03441, FAD_binding_7, 1 hit |
PRINTSi | PR00147, DNAPHOTLYASE |
SUPFAMi | SSF48173, SSF48173, 1 hit SSF52425, SSF52425, 1 hit |
PROSITEi | View protein in PROSITE PS00394, DNA_PHOTOLYASES_1_1, 1 hit PS51645, PHR_CRY_ALPHA_BETA, 1 hit |
i Sequence
Sequence statusi: Complete.
F9VNB1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MDCIFIFRRD LRLEDNTGLN YALSECDRVI PVFIADPRQL INNPYKSEFA
60 70 80 90 100
VSFMINSLLE LDDELRKKGS RLNVFFGEAE KVVSRFFNKV DAIYVNEDYT
110 120 130 140 150
PFSISRDEKI RKVCEENGIE FKAYEDYLLT PKSLFHHRNF TSFYNEVSKV
160 170 180 190 200
KVREPETMEG SFDVTDSSMN VDFLLTFKKI ESPLFRGGRR EGLYLLHRNV
210 220 230 240 250
DFRRRDYPAE NNNYRLSPHL KFGTISMREA YYTQKGKEEF VRELYWRDFF
260 270 280 290 300
TLLAYYNPHV FGHCYRREYD NISWENNESY FEAWKEGRTG YPIIDAGMRM
310 320 330 340 350
LNSTGYINGR VRMLVAFFLV KVLFVDWRWG ERYFATKLVD YDPAINNGNW
360 370 380 390 400
QWIASTGVDY MFRVFNPWKQ QEKFDPEAKF IKEWVEELKD VPPSIIHSIY
410 420 430
KTKVPGYPSP IVNWLERVNY VKSEYKNVKA VL
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BA000023 Genomic DNA Translation: BAK54408.1 |
RefSeqi | WP_010978886.1, NC_003106.2 |
Genome annotation databases
EnsemblBacteriai | BAK54408; BAK54408; STK_08890 |
GeneIDi | 1458853 |
KEGGi | sto:STK_08890 |
PATRICi | fig|273063.9.peg.999 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BA000023 Genomic DNA Translation: BAK54408.1 |
RefSeqi | WP_010978886.1, NC_003106.2 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
2E0I | X-ray | 2.80 | A/B/C/D | 1-432 | [»] | |
SMRi | F9VNB1 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein-protein interaction databases
STRINGi | 273063.STK_08890 |
Genome annotation databases
EnsemblBacteriai | BAK54408; BAK54408; STK_08890 |
GeneIDi | 1458853 |
KEGGi | sto:STK_08890 |
PATRICi | fig|273063.9.peg.999 |
Phylogenomic databases
eggNOGi | arCOG02840, Archaea |
OMAi | IWFRHGL |
OrthoDBi | 21461at2157 |
Enzyme and pathway databases
BioCyci | STOK273063:G1G3D-1016-MONOMER |
Family and domain databases
Gene3Di | 3.40.50.620, 1 hit |
InterProi | View protein in InterPro IPR036134, Crypto/Photolyase_FAD-like_sf IPR036155, Crypto/Photolyase_N_sf IPR005101, Cryptochr/Photolyase_FAD-bd IPR002081, Cryptochrome/DNA_photolyase_1 IPR018394, DNA_photolyase_1_CS_C IPR006050, DNA_photolyase_N IPR014729, Rossmann-like_a/b/a_fold |
Pfami | View protein in Pfam PF00875, DNA_photolyase, 1 hit PF03441, FAD_binding_7, 1 hit |
PRINTSi | PR00147, DNAPHOTLYASE |
SUPFAMi | SSF48173, SSF48173, 1 hit SSF52425, SSF52425, 1 hit |
PROSITEi | View protein in PROSITE PS00394, DNA_PHOTOLYASES_1_1, 1 hit PS51645, PHR_CRY_ALPHA_BETA, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F9VNB1_SULTO | |
Accessioni | F9VNB1Primary (citable) accession number: F9VNB1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | October 19, 2011 |
Last sequence update: | October 19, 2011 | |
Last modified: | December 2, 2020 | |
This is version 60 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |