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Entry version 31 (08 May 2019)
Sequence version 1 (21 Sep 2011)
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Protein
Submitted name:

Transposase IS4 family protein

Gene

FsymDg_0133

Organism
Frankia symbiont subsp. Datisca glomerata
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Transposase IS4 family proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:FsymDg_0133Imported, FsymDg_0470Imported, FsymDg_1836Imported, FsymDg_2359Imported, FsymDg_2723Imported, FsymDg_2782Imported, FsymDg_2960Imported, FsymDg_3547Imported, FsymDg_4116Imported, FsymDg_4153Imported, FsymDg_4439Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFrankia symbiont subsp. Datisca glomerataImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri656024 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaActinobacteriaFrankialesFrankiaceaeFrankia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001549 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini13 – 110Nterm_IS4InterPro annotationAdd BLAST98
Domaini128 – 368DDE_Tnp_1InterPro annotationAdd BLAST241

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105VNT Bacteria
COG3385 LUCA

Identification of Orthologs from Complete Genome Data

More...
OMAi
MAVKELW

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012337 RNaseH-like_sf
IPR002559 Transposase_11
IPR024473 Transposases_IS4_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01609 DDE_Tnp_1, 1 hit
PF13006 Nterm_IS4, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53098 SSF53098, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F8AZF0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPAVDNDRLT DRISIGVLAR IVPRDLVEEV LVETKRQERR TRLLPARVMV
60 70 80 90 100
YFTMTMCLFF DDDYEEVMRK LAGALRWLGN WQGDWKVPTT GAISQARIRL
110 120 130 140 150
GAAPLKVLFE RVAVPVAGLG TKGTWLRSRR LMAIDGFFLD AADTPENVAR
160 170 180 190 200
FGRSTNGHKA SALPQVHVVA LAECGTHAIV SAAVGPRASD ERALAATLLD
210 220 230 240 250
ACEPGMLLTA DRYFYSFDLW QQALDTGADL LWRVKSDLTL PVIRSLPDSS
260 270 280 290 300
YLSIIVNPKI RGKQRNQIIA DARAGRDFPE DSATPVRVIE YTVPDRTGSG
310 320 330 340 350
TGELICLITN ILNQTDIPAV ELATAYHERW EIENIFDEIK THQRGEARVL
360 370 380 390 400
RSKLPDLVEQ EIWALLLSHY AIRCLMCEAA DEADVDPDRL SFMRSLRVVR
410
RQVTDQADFS P
Length:411
Mass (Da):46,041
Last modified:September 21, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEA0B26A2387DA553
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP002801 Genomic DNA Translation: AEH07713.1
CP002801 Genomic DNA Translation: AEH08016.1
CP002801 Genomic DNA Translation: AEH09280.1
CP002801 Genomic DNA Translation: AEH09745.1
CP002801 Genomic DNA Translation: AEH10069.1
CP002801 Genomic DNA Translation: AEH10119.1
CP002801 Genomic DNA Translation: AEH10278.1
CP002801 Genomic DNA Translation: AEH10828.1
CP002801 Genomic DNA Translation: AEH11387.1
CP002801 Genomic DNA Translation: AEH11423.1
CP002801 Genomic DNA Translation: AEH11688.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AEH07713; AEH07713; FsymDg_0133
AEH08016; AEH08016; FsymDg_0470
AEH09280; AEH09280; FsymDg_1836
AEH09745; AEH09745; FsymDg_2359
AEH10069; AEH10069; FsymDg_2723
AEH10119; AEH10119; FsymDg_2782
AEH10278; AEH10278; FsymDg_2960
AEH10828; AEH10828; FsymDg_3547
AEH11387; AEH11387; FsymDg_4116
AEH11423; AEH11423; FsymDg_4153
AEH11688; AEH11688; FsymDg_4439

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
fsy:FsymDg_0133
fsy:FsymDg_0470
fsy:FsymDg_1836
fsy:FsymDg_2359
fsy:FsymDg_2723
fsy:FsymDg_2782
fsy:FsymDg_2960
fsy:FsymDg_3547
fsy:FsymDg_4116
fsy:FsymDg_4153
fsy:FsymDg_4439

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002801 Genomic DNA Translation: AEH07713.1
CP002801 Genomic DNA Translation: AEH08016.1
CP002801 Genomic DNA Translation: AEH09280.1
CP002801 Genomic DNA Translation: AEH09745.1
CP002801 Genomic DNA Translation: AEH10069.1
CP002801 Genomic DNA Translation: AEH10119.1
CP002801 Genomic DNA Translation: AEH10278.1
CP002801 Genomic DNA Translation: AEH10828.1
CP002801 Genomic DNA Translation: AEH11387.1
CP002801 Genomic DNA Translation: AEH11423.1
CP002801 Genomic DNA Translation: AEH11688.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAEH07713; AEH07713; FsymDg_0133
AEH08016; AEH08016; FsymDg_0470
AEH09280; AEH09280; FsymDg_1836
AEH09745; AEH09745; FsymDg_2359
AEH10069; AEH10069; FsymDg_2723
AEH10119; AEH10119; FsymDg_2782
AEH10278; AEH10278; FsymDg_2960
AEH10828; AEH10828; FsymDg_3547
AEH11387; AEH11387; FsymDg_4116
AEH11423; AEH11423; FsymDg_4153
AEH11688; AEH11688; FsymDg_4439
KEGGifsy:FsymDg_0133
fsy:FsymDg_0470
fsy:FsymDg_1836
fsy:FsymDg_2359
fsy:FsymDg_2723
fsy:FsymDg_2782
fsy:FsymDg_2960
fsy:FsymDg_3547
fsy:FsymDg_4116
fsy:FsymDg_4153
fsy:FsymDg_4439

Phylogenomic databases

eggNOGiENOG4105VNT Bacteria
COG3385 LUCA
OMAiMAVKELW

Family and domain databases

InterProiView protein in InterPro
IPR012337 RNaseH-like_sf
IPR002559 Transposase_11
IPR024473 Transposases_IS4_N
PfamiView protein in Pfam
PF01609 DDE_Tnp_1, 1 hit
PF13006 Nterm_IS4, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF8AZF0_FRADG
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F8AZF0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 21, 2011
Last sequence update: September 21, 2011
Last modified: May 8, 2019
This is version 31 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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