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Protein
Submitted name:

Synemin isoform A

Gene

SYNM

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Synemin isoform AImported
Gene namesi
Name:SYNMImported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Intermediate filamentPROSITE-ProRule annotationSAAS annotation

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9483.ENSCJAP00000031152

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 322IF rodInterPro annotationAdd BLAST312

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili15 – 35Sequence analysisAdd BLAST21
Coiled coili57 – 108Sequence analysisAdd BLAST52
Coiled coili192 – 293Sequence analysisAdd BLAST102

Sequence similaritiesi

Belongs to the intermediate filament family.PROSITE-ProRule annotationSAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IH92 Eukaryota
ENOG4111GBF LUCA
GeneTreeiENSGT00730000110953
KOiK10376
OMAiSWRLQTG
OrthoDBiEOG091G00OT

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR018039 IF_conserved
IPR039008 IF_rod_dom
IPR030634 SYNM
PANTHERiPTHR23239 PTHR23239, 1 hit
PTHR23239:SF194 PTHR23239:SF194, 1 hit
PfamiView protein in Pfam
PF00038 Filament, 1 hit
SMARTiView protein in SMART
SM01391 Filament, 1 hit
PROSITEiView protein in PROSITE
PS00226 IF_ROD_1, 1 hit
PS51842 IF_ROD_2, 1 hit

Sequencei

Sequence statusi: Complete.

F7IPI2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSWRLQTGP EKAELQELNA RLYDYVCRVR ELERENLLLE EELRGRQGLQ
60 70 80 90 100
GLWAEGQARC AEEARSLRQQ LEELSGATAL AEGERDALRR ELRELQRLDA
110 120 130 140 150
EERAARGRLD AELGAQRREL QEALGARAAL EAMLGRLLAE RRGLDAAHER
160 170 180 190 200
DVRELRARAA SLTMHFRARA TGPAAPPLRL REVHDSYALL VSESWRETVQ
210 220 230 240 250
LYEDKVRELE EALRRGQESR LQAEEETRLC AQEVEALRRE ALGLEQLRAR
260 270 280 290 300
LEDELLRMRE EYGLQAEERQ RVIDRLEDEK ATLTLAMADW LRDYQDLLQV
310 320 330 340 350
KTGLSLEVAT YRALLEGESN PEIVVWTEHT ENMPSEFRNK SYHYTESVLQ
360 370 380 390 400
RENERNQFSR QKATLASLNH GSALYSSLSG HRGSQTGTSI GGAARRGFLG
410 420 430 440 450
SGYSSSATTQ QENSYINSQT SVRTFFPTYG PLRNTEAQVK TFLDRPKAGD
460 470 480 490 500
TREVPVYIAE DSTVARQSSR ECRDNVAARA LESTQSNERT IILGKKTEVK
510 520 530 540 550
APREQERNRP ETIRTKPEEK MFDSKEKASE ERNLRWEELT KLDKEARQRE
560 570 580 590 600
SQQMREKEPL KEKSVREREI PISLEVSQDR RAEASPKGLQ TPVKDAGGGT
610 620 630 640 650
GREAKARELQ FRLGTSDATG ALPGDSMTET VAENIVTSIL KQFTQSPEAE
660 670 680 690 700
ASADSFPDTK VTYVDRKELP MERKTKTEIV VESKLTEDVD VSDEAGLDYL
710 720 730 740 750
LSKDIKEVGL KGKSAEQMIG DIINLGLKGR EGRAKVVNVE IVEEPVSYVS
760 770 780 790 800
GEMPEEFSVP FEVEEVDDVS PGSGGLVKEE EGYGERDVTF SVNQHQRTKQ
810 820 830 840 850
PQENTTHVEE VTEAGDSEGE QSYFVSTPDE YPGGHDRDDG SVYGQIHIEE
860 870 880 890 900
ESTIRYSWQD EIVQGTRRRT QRDDAVGEKV VKPSDVPAPS LEGDLGSTHW
910 920 930 940 950
KEQSRSGEFH AEATVIEKEI KIPHEFHTSM KGISSKEPRQ QLVEVIGQLE
960 970 980 990 1000
ETLPERMREE LAALTTEGQG GPGSVSVDVK KIQAADGGSV TLVAEVNLSQ
1010 1020 1030 1040 1050
TVDANQLDLE ELSRDEAGEM EKAVESVVRE SLSKQRRPVP GSPDEADGAE
1060 1070 1080 1090 1100
APGTGVRFRR WATRELYIPS GKSEDAGQST HSSGWHSPQG PVSATVEVSS
1110 1120 1130 1140 1150
PTGFSQSQVL EDVSQAARHI TLGPSEVWRT ERMSYEGPTA EVVEVSEGGD
1160 1170 1180 1190 1200
LSQAVSPTGA SRSVRHVTLG PGQSPPSREV VFQGPAPASP EDGGSPEPGP
1210 1220 1230 1240 1250
VEFSSDMDGS GRHSTFGSKQ FHAEKEILFQ GPISAAGKVG DYFATEESVG
1260 1270 1280 1290 1300
TQISVRQLQL GPREGFSGQI QFTTPLSDKL ELGVRGDSVH TEGLPGSSTS
1310 1320 1330 1340 1350
IRHISLGPQR HQTTQQIVYH GLLPRPGESG DSESIVHRES SADVPQATHS
1360 1370 1380 1390 1400
HTVGRKTFMT EKSTFQSVIS ESPEEDSAGD MSGAEVTSGI SRSFRHIQLG
1410 1420 1430 1440 1450
PTENETSECV VIRGPVSRTL VLPGSAASPE LDELEDSRRT LRHTAPGPKE
1460 1470 1480 1490 1500
TSFTFQMDVS NVEAIRSRTQ EAGARGVSDR GAWRDTDSRD DQAVGVSFKV
1510 1520 1530 1540 1550
SAGEEQGKEQ AMFDKKVQLQ RMVDQRSVIS DEKKVALLYL DSEEEENDGH

WF
Length:1,552
Mass (Da):172,032
Last modified:July 27, 2011 - v1
Checksum:i0914275C85CA254B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ACFV01085669 Genomic DNA No translation available.
ACFV01085670 Genomic DNA No translation available.
ACFV01085671 Genomic DNA No translation available.
GAMT01000372 mRNA Translation: JAB11489.1
RefSeqiXP_008996562.1, XM_008998314.2

Genome annotation databases

EnsembliENSCJAT00000032921; ENSCJAP00000031152; ENSCJAG00000016926
GeneIDi100401502
KEGGicjc:100401502

Similar proteinsi

Entry informationi

Entry nameiF7IPI2_CALJA
AccessioniPrimary (citable) accession number: F7IPI2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: June 20, 2018
This is version 41 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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