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Protein
Submitted name:

Zinc finger protein 307, isoform CRA_b

Gene

Zkscan3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Biological processTranscription, Transcription regulationSAAS annotation
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-212436 Generic Transcription Pathway

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger protein 307, isoform CRA_bImported
Submitted name:
Zinc finger with KRAB and SCAN domains 3Imported
Gene namesi
Name:Zkscan3Imported
Synonyms:Zfp307Imported
ORF Names:rCG_23122Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 17

Organism-specific databases

RGDi1305753 Zkscan3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiF7DP88

Expressioni

Gene expression databases

BgeeiENSRNOG00000055000 Expressed in 9 organ(s), highest expression level in heart
ExpressionAtlasiF7DP88 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024783

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini51 – 133SCAN boxInterPro annotationAdd BLAST83
Domaini313 – 340C2H2-typeInterPro annotationAdd BLAST28
Domaini341 – 368C2H2-typeInterPro annotationAdd BLAST28
Domaini369 – 396C2H2-typeInterPro annotationAdd BLAST28
Domaini397 – 424C2H2-typeInterPro annotationAdd BLAST28
Domaini425 – 452C2H2-typeInterPro annotationAdd BLAST28
Domaini479 – 506C2H2-typeInterPro annotationAdd BLAST28
Domaini507 – 534C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00760000118881
KOiK09229

Family and domain databases

CDDicd07765 KRAB_A-box, 1 hit
cd07936 SCAN, 1 hit
Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR001909 KRAB
IPR036051 KRAB_dom_sf
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF01352 KRAB, 1 hit
PF02023 SCAN, 1 hit
PF00096 zf-C2H2, 7 hits
SMARTiView protein in SMART
SM00349 KRAB, 1 hit
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 7 hits
SUPFAMiSSF109640 SSF109640, 1 hit
SSF57667 SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 7 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

F7DP88-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MARESRESTT LDSHSAEDQM ELLVIKVEQE EVSPLAEETS WLGSPGPDRS
60 70 80 90 100
RQRFRAFRYP DAAGPRQALS RLRELCRQWL RPDMHSKEQI LELLVLEQFL
110 120 130 140 150
TILPGELQAW VREQHPDSGE EVVALLEYLD RQLDETPPQV PDDDDGQELL
160 170 180 190 200
CSKAVLLTSA QGSESSQMES MEPLLKQESL GSLPSEVRVT QAGHCGEDGV
210 220 230 240 250
TATRLTSELQ GLLKMEDVAP GLSPRWTEQD SSQMNLYKDE MQENSGSLVS
260 270 280 290 300
LDENMQTKVR DLPPAEENTE QKPEQTVCFL GEDTVQIPTG TEASEQEGKL
310 320 330 340 350
QTTQKNATGN RRFYCRECGK SFAQSSGLSK HKRIHTGLKP YECEECGKAF
360 370 380 390 400
IGSSALIIHQ RVHTGEKPYE CEECGKAFSH SSDLIKHQRT HTGEKPYECD
410 420 430 440 450
DCGKTFTQSC SLLEHHRIHT GEKPYQCNMC PKAFRRSSHL LRHQRTHTGD
460 470 480 490 500
KDFFVPEPYW ESQSRVESHW ENIETPVSYQ CNDCERSFSR ITSLIEHQKV
510 520 530 540 550
HTGEKPFECQ TCGKGFTRPS YLIQHQRRHT GKKTSVTVTP AVHSEVGVQL

SLN
Length:553
Mass (Da):62,658
Last modified:April 3, 2013 - v1
Checksum:i0547C46A73D5835E
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q5FVP7Q5FVP7_RAT
Zinc finger with KRAB and SCAN doma...
Zkscan3
554Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07027819 Genomic DNA No translation available.
CH474072 Genomic DNA Translation: EDL84543.1
CH474072 Genomic DNA Translation: EDL84544.1
CH474072 Genomic DNA Translation: EDL84545.1
RefSeqiNP_001012053.2, NM_001012053.2
XP_006254158.1, XM_006254096.3
XP_006254161.1, XM_006254099.3
XP_006254163.1, XM_006254101.3
XP_008769948.1, XM_008771726.1
XP_017456039.1, XM_017600550.1
XP_017456040.1, XM_017600551.1
XP_017456041.1, XM_017600552.1
UniGeneiRn.8231

Genome annotation databases

EnsembliENSRNOT00000081063; ENSRNOP00000069061; ENSRNOG00000055000
GeneIDi306977
KEGGirno:306977

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07027819 Genomic DNA No translation available.
CH474072 Genomic DNA Translation: EDL84543.1
CH474072 Genomic DNA Translation: EDL84544.1
CH474072 Genomic DNA Translation: EDL84545.1
RefSeqiNP_001012053.2, NM_001012053.2
XP_006254158.1, XM_006254096.3
XP_006254161.1, XM_006254099.3
XP_006254163.1, XM_006254101.3
XP_008769948.1, XM_008771726.1
XP_017456039.1, XM_017600550.1
XP_017456040.1, XM_017600551.1
XP_017456041.1, XM_017600552.1
UniGeneiRn.8231

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000024783

Proteomic databases

PRIDEiF7DP88

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000081063; ENSRNOP00000069061; ENSRNOG00000055000
GeneIDi306977
KEGGirno:306977

Organism-specific databases

CTDi80317
RGDi1305753 Zkscan3

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00760000118881
KOiK09229

Enzyme and pathway databases

ReactomeiR-RNO-212436 Generic Transcription Pathway

Gene expression databases

BgeeiENSRNOG00000055000 Expressed in 9 organ(s), highest expression level in heart
ExpressionAtlasiF7DP88 baseline and differential

Family and domain databases

CDDicd07765 KRAB_A-box, 1 hit
cd07936 SCAN, 1 hit
Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR001909 KRAB
IPR036051 KRAB_dom_sf
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF01352 KRAB, 1 hit
PF02023 SCAN, 1 hit
PF00096 zf-C2H2, 7 hits
SMARTiView protein in SMART
SM00349 KRAB, 1 hit
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 7 hits
SUPFAMiSSF109640 SSF109640, 1 hit
SSF57667 SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 7 hits
ProtoNetiSearch...

Entry informationi

Entry nameiF7DP88_RAT
AccessioniPrimary (citable) accession number: F7DP88
Entry historyiIntegrated into UniProtKB/TrEMBL: April 3, 2013
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 54 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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