UniProtKB - F7DCK5 (F7DCK5_HORSE)
Protein
Submitted name:
RNA binding motif single stranded interacting protein 1
Gene
RBMS1
Organism
Equus caballus (Horse)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: UniProtKB-UniRule
Keywordsi
Molecular function | RNA-bindingPROSITE-ProRule annotation |
Names & Taxonomyi
Protein namesi | Submitted name: RNA binding motif single stranded interacting protein 1Imported |
Gene namesi | Name:RBMS1Imported |
Organismi | Equus caballus (Horse)Imported |
Taxonomic identifieri | 9796 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Perissodactyla › Equidae › Equus › |
Proteomesi |
|
Organism-specific databases
VGNCi | VGNC:22253, RBMS1 |
Subcellular locationi
Other locations
- ribonucleoprotein complex Source: InterPro
Expressioni
Gene expression databases
Bgeei | ENSECAG00000019894, Expressed in synovial membrane of synovial joint and 23 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 62 – 135 | RRMInterPro annotationAdd BLAST | 74 | |
Domaini | 141 – 226 | RRMInterPro annotationAdd BLAST | 86 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 30 – 56 | DisorderedSequence analysisAdd BLAST | 27 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 38 – 56 | PolarSequence analysisAdd BLAST | 19 |
Keywords - Domaini
RepeatARBA annotationPhylogenomic databases
GeneTreei | ENSGT00940000156082 |
Family and domain databases
CDDi | cd12470, RRM1_MSSP1, 1 hit |
Gene3Di | 3.30.70.330, 2 hits |
InterProi | View protein in InterPro IPR002343, Hud_Sxl_RNA IPR034404, MSSP1_RRM1 IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom |
Pfami | View protein in Pfam PF00076, RRM_1, 2 hits |
PRINTSi | PR00961, HUDSXLRNA |
SMARTi | View protein in SMART SM00360, RRM, 2 hits |
SUPFAMi | SSF54928, SSF54928, 2 hits |
PROSITEi | View protein in PROSITE PS50102, RRM, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All
F7DCK5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MGKVWKQQMY PQYATYYYPQ YLQAKQSLVP AHPMAPPSPS TTSSNNNSSS
60 70 80 90 100
SSNSGWDQLS KTNLYIRGLP PNTTDQDLVK LCQPYGKIVS TKAILDKTTN
110 120 130 140 150
KCKGYGFVDF DSPAAAQKAV SALKANGVQA QMAKQQEQDP TNLYISNLPL
160 170 180 190 200
SMDEQELENM LKPFGQVIST RILRDSSGTS RGVGFARMES TEKCEAVIGH
210 220 230 240 250
FNGKFIKTPP GVSAPTEPLL CKFADGGQKK RQNPNKYIPN GRPWHREGEV
260 270 280 290 300
RLAGMTLTYD PTTAAIQNGF YPSPYSIATN RMITQTSITP YIASPVSAYQ
310 320 330 340 350
VQSPSWMQPQ PYILQHPGAV LTPSMEHTMS LQPTSMISPL AQQMSHLSLG
360 370 380 390 400
STGTYMPATS AMQGAYLPQY THVQTTAVPV EEASGQQQVA VETSNDHSPY
TFQPNK
Computationally mapped potential isoform sequencesi
There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketF7CPM0 | F7CPM0_HORSE | RNA binding motif single stranded i... | RBMS1 | 422 | Annotation score: | ||
A0A3Q2I0U9 | A0A3Q2I0U9_HORSE | RNA binding motif single stranded i... | RBMS1 | 417 | Annotation score: | ||
A0A3Q2I983 | A0A3Q2I983_HORSE | RNA binding motif single stranded i... | RBMS1 | 408 | Annotation score: |
Genome annotation databases
Ensembli | ENSECAT00000021546; ENSECAP00000017751; ENSECAG00000019894 |
Similar proteinsi
Cross-referencesi
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSECAT00000021546; ENSECAP00000017751; ENSECAG00000019894 |
Organism-specific databases
VGNCi | VGNC:22253, RBMS1 |
Phylogenomic databases
GeneTreei | ENSGT00940000156082 |
Gene expression databases
Bgeei | ENSECAG00000019894, Expressed in synovial membrane of synovial joint and 23 other tissues |
Family and domain databases
CDDi | cd12470, RRM1_MSSP1, 1 hit |
Gene3Di | 3.30.70.330, 2 hits |
InterProi | View protein in InterPro IPR002343, Hud_Sxl_RNA IPR034404, MSSP1_RRM1 IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom |
Pfami | View protein in Pfam PF00076, RRM_1, 2 hits |
PRINTSi | PR00961, HUDSXLRNA |
SMARTi | View protein in SMART SM00360, RRM, 2 hits |
SUPFAMi | SSF54928, SSF54928, 2 hits |
PROSITEi | View protein in PROSITE PS50102, RRM, 2 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F7DCK5_HORSE | |
Accessioni | F7DCK5Primary (citable) accession number: F7DCK5 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | July 27, 2011 |
Last sequence update: | April 10, 2019 | |
Last modified: | August 12, 2020 | |
This is version 44 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |