UniProtKB - F7BTH1 (F7BTH1_MACMU)
Protein
Platelet-derived growth factor receptor beta
Gene
PDGFRB
Organism
Macaca mulatta (Rhesus macaque)
Status
Functioni
Tyrosine-protein kinase that acts as cell-surface receptor for homodimeric PDGFB and PDGFD and for heterodimers formed by PDGFA and PDGFB, and plays an essential role in the regulation of embryonic development, cell proliferation, survival, differentiation, chemotaxis and migration. Plays an essential role in blood vessel development by promoting proliferation, migration and recruitment of pericytes and smooth muscle cells to endothelial cells.UniRule annotation
Catalytic activityi
- ATP + L-tyrosyl-[protein] = ADP + H+ + O-phospho-L-tyrosyl-[protein]UniRule annotationARBA annotationEC:2.7.10.1UniRule annotationARBA annotation
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Binding sitei | 634 | ATPUniRule annotation | 1 | |
Active sitei | 826 | Proton acceptorUniRule annotation | 1 |
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 606 – 614 | ATPUniRule annotation | 9 |
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- growth factor binding Source: GO_Central
- platelet-derived growth factor-activated receptor activity Source: GO_Central
- platelet-derived growth factor beta-receptor activity Source: GO_Central
- platelet-derived growth factor binding Source: GO_Central
- platelet-derived growth factor receptor binding Source: Ensembl
- protein kinase binding Source: Ensembl
- transmembrane receptor protein tyrosine kinase activity Source: GO_Central
- vascular endothelial growth factor binding Source: Ensembl
GO - Biological processi
- adrenal gland development Source: Ensembl
- aorta morphogenesis Source: Ensembl
- cardiac myofibril assembly Source: Ensembl
- cell migration involved in coronary angiogenesis Source: Ensembl
- cell migration involved in vasculogenesis Source: Ensembl
- cellular response to hydrogen peroxide Source: Ensembl
- embryonic organ development Source: Ensembl
- in utero embryonic development Source: Ensembl
- metanephric glomerular capillary formation Source: Ensembl
- metanephric glomerular mesangial cell proliferation involved in metanephros development Source: Ensembl
- multicellular organism development Source: GO_Central
- phosphatidylinositol-mediated signaling Source: Ensembl
- phosphatidylinositol metabolic process Source: Ensembl
- positive regulation of calcium ion import Source: Ensembl
- positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathway Source: Ensembl
- positive regulation of chemotaxis Source: Ensembl
- positive regulation of DNA biosynthetic process Source: Ensembl
- positive regulation of ERK1 and ERK2 cascade Source: Ensembl
- positive regulation of kinase activity Source: GO_Central
- positive regulation of MAP kinase activity Source: Ensembl
- positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway Source: Ensembl
- positive regulation of mitotic nuclear division Source: Ensembl
- positive regulation of phosphatidylinositol 3-kinase activity Source: Ensembl
- positive regulation of phosphatidylinositol 3-kinase signaling Source: Ensembl
- positive regulation of phospholipase C activity Source: Ensembl
- positive regulation of phosphoprotein phosphatase activity Source: Ensembl
- positive regulation of reactive oxygen species metabolic process Source: Ensembl
- positive regulation of smooth muscle cell migration Source: GO_Central
- positive regulation of smooth muscle cell proliferation Source: Ensembl
- protein autophosphorylation Source: Ensembl
- regulation of actin cytoskeleton organization Source: Ensembl
- regulation of peptidyl-tyrosine phosphorylation Source: Ensembl
- response to ceramide Source: Ensembl
- retina vasculature development in camera-type eye Source: Ensembl
- ruffle assembly Source: Ensembl
- skeletal system morphogenesis Source: Ensembl
- smooth muscle cell chemotaxis Source: Ensembl
- smooth muscle tissue development Source: Ensembl
- tissue homeostasis Source: Ensembl
- transmembrane receptor protein tyrosine kinase signaling pathway Source: GO_Central
Keywordsi
Molecular function | Developmental proteinUniRule annotationARBA annotation, Kinase, ReceptorUniRule annotationARBA annotation, Transferase, Tyrosine-protein kinaseUniRule annotationARBA annotation |
Biological process | ChemotaxisUniRule annotation |
Ligand | ATP-bindingUniRule annotation, Nucleotide-binding |
Names & Taxonomyi
Protein namesi | Recommended name: Platelet-derived growth factor receptor betaUniRule annotation (EC:2.7.10.1UniRule annotation)Short name: PDGF-R-betaUniRule annotation Short name: PDGFR-betaUniRule annotation Alternative name(s): Beta platelet-derived growth factor receptorUniRule annotation Beta-type platelet-derived growth factor receptorUniRule annotation |
Gene namesi | Name:PDGFRBImported |
Organismi | Macaca mulatta (Rhesus macaque)Imported |
Taxonomic identifieri | 9544 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Cercopithecidae › Cercopithecinae › Macaca |
Proteomesi |
|
Organism-specific databases
VGNCi | VGNC:75929, PDGFRB |
Subcellular locationi
Plasma membrane
- Cell membrane UniRule annotation; Single-pass type I membrane protein UniRule annotation
Lysosome
- Lysosome lumen UniRule annotationARBA annotation
Other locations
- Cytoplasmic vesicle UniRule annotation
- Membrane UniRule annotationARBA annotation; Single-pass type I membrane protein UniRule annotationARBA annotation
Golgi apparatus
- Golgi apparatus Source: Ensembl
Lysosome
- lysosomal lumen Source: UniProtKB-SubCell
Plasma Membrane
- integral component of plasma membrane Source: GO_Central
Other locations
- cell surface Source: Ensembl
- cytoplasmic vesicle Source: UniProtKB-KW
- receptor complex Source: GO_Central
- ruffle Source: Ensembl
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 532 – 556 | HelicalSequence analysisAdd BLAST | 25 |
Keywords - Cellular componenti
Cell membraneUniRule annotationARBA annotation, Cytoplasmic vesicleUniRule annotation, LysosomeUniRule annotationARBA annotation, MembranePTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Signal peptidei | 1 – 32 | Sequence analysisAdd BLAST | 32 | |
ChainiPRO_5023866846 | 33 – 1106 | Platelet-derived growth factor receptor betaSequence analysisAdd BLAST | 1074 |
Keywords - PTMi
Disulfide bondARBA annotation, GlycoproteinARBA annotation, PhosphoproteinARBA annotationExpressioni
Gene expression databases
Bgeei | ENSMMUG00000011557, Expressed in spleen and 21 other tissues |
ExpressionAtlasi | F7BTH1, baseline |
Interactioni
Subunit structurei
Interacts with homodimeric PDGFB and PDGFD, and with heterodimers formed by PDGFA and PDGFB.
UniRule annotationGO - Molecular functioni
- growth factor binding Source: GO_Central
- platelet-derived growth factor binding Source: GO_Central
- platelet-derived growth factor receptor binding Source: Ensembl
- protein kinase binding Source: Ensembl
- vascular endothelial growth factor binding Source: Ensembl
Protein-protein interaction databases
STRINGi | 9544.ENSMMUP00000015166 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 20 – 117 | Ig-likeInterPro annotationAdd BLAST | 98 | |
Domaini | 214 – 307 | Ig-likeInterPro annotationAdd BLAST | 94 | |
Domaini | 600 – 962 | Protein kinaseInterPro annotationAdd BLAST | 363 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1018 – 1106 | DisorderedSequence analysisAdd BLAST | 89 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1041 – 1063 | PolarSequence analysisAdd BLAST | 23 | |
Compositional biasi | 1071 – 1085 | PolyampholyteSequence analysisAdd BLAST | 15 |
Sequence similaritiesi
Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.UniRule annotation
Keywords - Domaini
Immunoglobulin domainUniRule annotationARBA annotation, SignalSequence analysisARBA annotation, Transmembrane, Transmembrane helixSequence analysisARBA annotationPhylogenomic databases
eggNOGi | KOG0200, Eukaryota |
GeneTreei | ENSGT00940000157138 |
HOGENOMi | CLU_000288_49_0_1 |
InParanoidi | F7BTH1 |
OMAi | TYVCNVS |
OrthoDBi | 236292at2759 |
TreeFami | TF325768 |
Family and domain databases
Gene3Di | 2.60.40.10, 5 hits |
InterProi | View protein in InterPro IPR007110, Ig-like_dom IPR036179, Ig-like_dom_sf IPR013783, Ig-like_fold IPR013098, Ig_I-set IPR003599, Ig_sub IPR003598, Ig_sub2 IPR013151, Immunoglobulin IPR011009, Kinase-like_dom_sf IPR027288, PGFRB IPR000719, Prot_kinase_dom IPR017441, Protein_kinase_ATP_BS IPR001245, Ser-Thr/Tyr_kinase_cat_dom IPR008266, Tyr_kinase_AS IPR020635, Tyr_kinase_cat_dom IPR001824, Tyr_kinase_rcpt_3_CS |
Pfami | View protein in Pfam PF07679, I-set, 1 hit PF00047, ig, 1 hit PF07714, PK_Tyr_Ser-Thr, 1 hit |
PIRSFi | PIRSF500948, Beta-PDGF_receptor, 1 hit |
SMARTi | View protein in SMART SM00409, IG, 3 hits SM00408, IGc2, 3 hits SM00219, TyrKc, 1 hit |
SUPFAMi | SSF48726, SSF48726, 3 hits SSF56112, SSF56112, 1 hit |
PROSITEi | View protein in PROSITE PS50835, IG_LIKE, 2 hits PS00107, PROTEIN_KINASE_ATP, 1 hit PS50011, PROTEIN_KINASE_DOM, 1 hit PS00109, PROTEIN_KINASE_TYR, 1 hit PS00240, RECEPTOR_TYR_KIN_III, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All
F7BTH1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MRLPGAMPAL ALKGQLLLLP LLLLLEPQVS QGLVITPPGP ELILNVSSTF
60 70 80 90 100
VLTCSGSAPV VWERMSQELP QEMAKAQDNT FSSVLTLTNL TGLDTGEYFC
110 120 130 140 150
TYNDSRGLEP DERKRLYIFV PDPTMGFLPN DAEELFIFLT EITEITIPCR
160 170 180 190 200
VTDPQLVVTL HEKKGDIALP VPYDHQRGFS GIFEDRSYIC KTTIGDREVD
210 220 230 240 250
SDAYYVYRLQ VSSINVSVNA VQTVVRQGEN ITLMCIVIGN EVVNFEWMYP
260 270 280 290 300
RKESGRLVEP VTDFLLDMPY HIRSILHIPS AELEDSGTYT CNVTESVNDH
310 320 330 340 350
QDEKAINITV VESGYVRLLG EVGALQFAEL HRSRTLQVVF EAYPPPTVLW
360 370 380 390 400
FKDNRTLGDS SAGEIALSTR NVSETRYVSE LTLVRVKVAE AGHYTMRAFH
410 420 430 440 450
EDAEVQLSFQ LQINVPVRVL ELSESHPDSG EQTVRCRGRG MPQPNIIWSA
460 470 480 490 500
CRDLKRCPRE LPPMLLGNSS EEESQLETNV TYWEEEQEFE VVSTLRLQHV
510 520 530 540 550
DRPLSVRCTL RNAVGQDMQE VIVVPHSLPF KAVVISAILA LVVLTIISLI
560 570 580 590 600
ILIMLWQKKP RYEIRWKVIE SVSSDGHEYI YVDPMQLPYD STWELPRDQL
610 620 630 640 650
VLGRTLGSGA FGQVVEATAH GLSHSQATMK VAVKMLKSTA RSSEKQALMS
660 670 680 690 700
ELKIMSHLGP HLNVVNLLGA CTKGGPIYII TEYCRYGDLV DYLHRNKHTF
710 720 730 740 750
LQHHSDKRRP PSAELYSNAL PVGLPLPSHV SLTGESDGGY MDMSKDESVD
760 770 780 790 800
YVPMLDMKGD VKYADIESSN YMAPYDNYVP SAPERTCRAT LINESPVLSY
810 820 830 840 850
MDLVGFSYQV ANGMEFLASK NCVHRDLAAR NVLICEGKLV KICDFGLARD
860 870 880 890 900
IMRDSNYISK GSTFLPLKWM APESIFNSLY TTLSDVWSFG ILLWEIFTLG
910 920 930 940 950
GTPYPELPMN EQFYNAIKRG YRMAQPAHAS DEIYEIMQKC WEEKFEIRPP
960 970 980 990 1000
FSQLVLLLER LLGEGYKKKY QQVDEEFLRS DHPAILRSQA RLPGFHGLRS
1010 1020 1030 1040 1050
PLDSSSVLYT AVQPNEGDND YIIPLPDPKP EVADEGPLEG SPSLASSTLN
1060 1070 1080 1090 1100
EVNTSSTISC DSPLEPQEEP EPEPQLERQV EPEPELEQLP DSGCPAPRAE
AEDSFL
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A1D5Q2Y8 | A0A1D5Q2Y8_MACMU | Platelet-derived growth factor rece... | PDGFRB | 1,106 | Annotation score: | ||
A0A5F8A9A2 | A0A5F8A9A2_MACMU | Platelet-derived growth factor rece... | PDGFRB | 1,042 | Annotation score: |
Sequence databases
RefSeqi | XP_001107595.1, XM_001107595.3 |
Genome annotation databases
Ensembli | ENSMMUT00000016184; ENSMMUP00000015166; ENSMMUG00000011557 |
GeneIDi | 711353 |
KEGGi | mcc:711353 |
Similar proteinsi
Cross-referencesi
Sequence databases
RefSeqi | XP_001107595.1, XM_001107595.3 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 9544.ENSMMUP00000015166 |
Genome annotation databases
Ensembli | ENSMMUT00000016184; ENSMMUP00000015166; ENSMMUG00000011557 |
GeneIDi | 711353 |
KEGGi | mcc:711353 |
Organism-specific databases
CTDi | 5159 |
VGNCi | VGNC:75929, PDGFRB |
Phylogenomic databases
eggNOGi | KOG0200, Eukaryota |
GeneTreei | ENSGT00940000157138 |
HOGENOMi | CLU_000288_49_0_1 |
InParanoidi | F7BTH1 |
OMAi | TYVCNVS |
OrthoDBi | 236292at2759 |
TreeFami | TF325768 |
Gene expression databases
Bgeei | ENSMMUG00000011557, Expressed in spleen and 21 other tissues |
ExpressionAtlasi | F7BTH1, baseline |
Family and domain databases
Gene3Di | 2.60.40.10, 5 hits |
InterProi | View protein in InterPro IPR007110, Ig-like_dom IPR036179, Ig-like_dom_sf IPR013783, Ig-like_fold IPR013098, Ig_I-set IPR003599, Ig_sub IPR003598, Ig_sub2 IPR013151, Immunoglobulin IPR011009, Kinase-like_dom_sf IPR027288, PGFRB IPR000719, Prot_kinase_dom IPR017441, Protein_kinase_ATP_BS IPR001245, Ser-Thr/Tyr_kinase_cat_dom IPR008266, Tyr_kinase_AS IPR020635, Tyr_kinase_cat_dom IPR001824, Tyr_kinase_rcpt_3_CS |
Pfami | View protein in Pfam PF07679, I-set, 1 hit PF00047, ig, 1 hit PF07714, PK_Tyr_Ser-Thr, 1 hit |
PIRSFi | PIRSF500948, Beta-PDGF_receptor, 1 hit |
SMARTi | View protein in SMART SM00409, IG, 3 hits SM00408, IGc2, 3 hits SM00219, TyrKc, 1 hit |
SUPFAMi | SSF48726, SSF48726, 3 hits SSF56112, SSF56112, 1 hit |
PROSITEi | View protein in PROSITE PS50835, IG_LIKE, 2 hits PS00107, PROTEIN_KINASE_ATP, 1 hit PS50011, PROTEIN_KINASE_DOM, 1 hit PS00109, PROTEIN_KINASE_TYR, 1 hit PS00240, RECEPTOR_TYR_KIN_III, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F7BTH1_MACMU | |
Accessioni | F7BTH1Primary (citable) accession number: F7BTH1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | July 27, 2011 |
Last sequence update: | December 11, 2019 | |
Last modified: | February 10, 2021 | |
This is version 79 of the entry and version 3 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |