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UniProtKB - F7BCL0 (F7BCL0_XENTR)

Entry version 44 (02 Dec 2020)
Sequence version 3 (02 Dec 2020)
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Protein
Submitted name:

Zinc finger, BED-type containing 4

Gene

zbed4

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Zinc finger, BED-type containing 4Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:zbed4Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri8364 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Amphibia › Batrachia › Anura › Pipoidea › Pipidae › Xenopodinae › Xenopus › Silurana
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008143 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

Organism-specific databases

Xenopus laevis and tropicalis biology and genomics resource

More...Xenbasei		XB-GENE-6076969, zbed4

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		F7BCL0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSXETG00000014526, Expressed in embryo and 12 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		8364.ENSXETP00000031783

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1121, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000161365
ENSGT00950000183156

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_006260_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		F7BCL0

TreeFam database of animal gene trees

More...TreeFami		TF322818

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.20.1270.60, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR027267, AH/BAR_dom_sf
IPR013606, I-BAR_dom
IPR027682, MTSS1
IPR030127, MTSS1/MTSS2
IPR003124, WH2_dom

The PANTHER Classification System

More...PANTHERi		PTHR15708, PTHR15708, 3 hits
PTHR15708:SF10, PTHR15708:SF10, 3 hits

Pfam protein domain database

More...Pfami		View protein in Pfam
PF08397, IMD, 1 hit
PF02205, WH2, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF103657, SSF103657, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51338, IMD, 1 hit
PS51082, WH2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F7BCL0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MESNLAEEKS NDLKVEDDED RNSDLDGMQI KMESDDLKQT ESSDEQEDKD 
        60         70         80         90        100
QFCADTSNTF VSAENEDDYG VLFSQYTTTL YDAAMEAVTQ SILTNKNISN 
       110        120        130        140        150
RKKSPAWNHF FISPRDSTKA ICMYCMKEFS RGKNEKDLST SCLMRHVRRA 
       160        170        180        190        200
HPRVLVSENG TMPGISSYSP PTLLLPPQSL DAAESNVTPA KYKKSALKIS 
       210        220        230        240        250
PSEKVPEETL TLSDEISSDF SLSGKNKEEV SVVSPVSFPN SQLDETTENI 
       260        270        280        290        300
VEKHIPTPKN SSGSRRRSAV WKHFYLSPLD NSKAVCIHCM NEFSRGKNGK 
       310        320        330        340        350
DLGTSCLIRH MWRAHRSIVL QENGGGTSLP PPYSVPPTLL PSLLPSDGGD 
       360        370        380        390        400
VGFVAVSPGK MGKDPASIPS SPDRASVEIQ CGVPNGNLID DDDESVLHSS 
       410        420        430        440        450
ESNTESLLLP SPEKLGRGRR SLTYKPHVFQ PSKKCMKRLK SEVWHHFSLS 
       460        470        480        490        500
TTDNQKAVCK YCSCMISRGK KGDLGTSCLM RHLYRRHPEV ILNQKKIDIS 
       510        520        530        540        550
LANSPYATLA SAECSSKMTE LTIVNHDNQI VFPTNSKKTS KLWNHFSICS 
       560        570        580        590        600
ADSTKVICMH CGRTISRGKK PTNLGTSCLL RHLQRFHSNV LQNNSVSETL 
       610        620        630        640        650
RPADSQTPVN TELAASSFED TTDKFSDSHP VAKKITSLIA EMIALDLQPY 
       660        670        680        690        700
SFVNNVGFNR LLEYLQPQYS LPSASYFSRT AIPDMYENVK QIIVSHLKEA 
       710        720        730        740        750
ESGVIHFTAG IWMSSQTREY LTLTAHWVTF ESSFRPHCEN HHCSALLHVS 
       760        770        780        790        800
QIDCDYNDVS VQKHLEYLWE SWIASCGLQI GITVTDNHSI AKTLNESEHS 
       810        820        830        840        850
SVQCFGHTVD LIVNEAIKSQ RMVQNLLSIA RKICERVHRS TKAKEKLAEL 
       860        870        880        890        900
QKEYDLPQHH LIQDVPSKWN TSFHMLDRLI EQKRAIDEMS IECSFRELIS 
       910        920        930        940        950
CDQWEVMQSV CHALKPFEAA SREMSMHMAT LSQVIPMIHI LNRKIEMLFE 
       960        970        980        990       1000
ETMGIDTMLK SLKEAMVCRL SSTLHDPRYI FATLLDPRYK ASLFSEEEAE 
      1010       1020       1030       1040       1050
EYKQGLIREL EILSSTSDDA LILNGCNKSS SPKSNGEENI WSLMANIKRS 
      1060       1070       1080       1090       1100
KALKEKLPED IVFAYLEEEV LEHNCDPLTY WNLKKSAWPV LAKLAVRFLG 
      1110       1120       1130       1140 
CPPSIIPSER LFNTANENCN FNQNRLMMEH FEQLIFLKVN LPLIYFQY
Length:1,148
Mass (Da):129,558
Last modified:December 2, 2020 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDDD9A5DE771BAB43
GO

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSXETT00000031783; ENSXETP00000031783; ENSXETG00000014526

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000031783

Proteomic databases

PaxDbiF7BCL0

Genome annotation databases

EnsembliENSXETT00000031783; ENSXETP00000031783; ENSXETG00000014526

Organism-specific databases

XenbaseiXB-GENE-6076969, zbed4

Phylogenomic databases

eggNOGiKOG1121, Eukaryota
GeneTreeiENSGT00940000161365
ENSGT00950000183156
HOGENOMiCLU_006260_0_0_1
InParanoidiF7BCL0
TreeFamiTF322818

Gene expression databases

BgeeiENSXETG00000014526, Expressed in embryo and 12 other tissues

Family and domain databases

Gene3Di1.20.1270.60, 1 hit
InterProiView protein in InterPro
IPR027267, AH/BAR_dom_sf
IPR013606, I-BAR_dom
IPR027682, MTSS1
IPR030127, MTSS1/MTSS2
IPR003124, WH2_dom
PANTHERiPTHR15708, PTHR15708, 3 hits
PTHR15708:SF10, PTHR15708:SF10, 3 hits
PfamiView protein in Pfam
PF08397, IMD, 1 hit
PF02205, WH2, 1 hit
SUPFAMiSSF103657, SSF103657, 1 hit
PROSITEiView protein in PROSITE
PS51338, IMD, 1 hit
PS51082, WH2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF7BCL0_XENTR
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F7BCL0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: December 2, 2020
Last modified: December 2, 2020
This is version 44 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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