Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 52 (11 Dec 2019)
Sequence version 3 (11 Dec 2019)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein
Submitted name:

AT-rich interaction domain 1B

Gene

ARID1B

Organism
Monodelphis domestica (Gray short-tailed opossum)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulationSAAS annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
AT-rich interaction domain 1BImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ARID1BImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMonodelphis domestica (Gray short-tailed opossum)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri13616 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaMetatheriaDidelphimorphiaDidelphidaeMonodelphis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002280 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMODG00000008068 Expressed in 7 organ(s), highest expression level in cerebellum

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
13616.ENSMODP00000010042

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2510 Eukaryota
ENOG410Y034 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000155634

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F6YJT2

Identification of Orthologs from Complete Genome Data

More...
OMAi
GQMQQHG

TreeFam database of animal gene trees

More...
TreeFami
TF320364

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.150.60, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
IPR033388 BAF250_C

The PANTHER Classification System

More...
PANTHERi
PTHR12656 PTHR12656, 1 hit
PTHR12656:SF11 PTHR12656:SF11, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01388 ARID, 1 hit
PF12031 BAF250_C, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00501 BRIGHT, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46774 SSF46774, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51011 ARID, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All

F6YJT2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDPLQNSHEG YPNSQYNHYA GYGRAGAGGG GGGGGSGGGG AGGGGGGGGG
60 70 80 90 100
GGSGVGGGGG GAGAGAGAVA AAAAAAAAAA AAAGGGGGGG GYGGSSSGYG
110 120 130 140 150
VLSSPRQQGS NMMMGPGGGG GGGGGGGGGG GGGGGGGATS LGKAAAAASS
160 170 180 190 200
AAGGFQRFAG QNQHPSGATP TLNQLLTSPS PMMRSYGSSY PDYSGNPNAP
210 220 230 240 250
GQQQSQAPGA AGAAPGSQQA AAGMGMGKDL GSQYGTANPG WAAAQQRNHP
260 270 280 290 300
AMSPGNTGQT INRSQGSPMD PMVMKRPQLY GMGNNPHSQP QQSSPYPGGS
310 320 330 340 350
YGPPGPQRYP IGIQGRTPGA MGGMQYPQQQ MPPQYGQQGV SGYCQQGQQP
360 370 380 390 400
YYNQQPQHLP PQAQYLSTQS QQRYQTQQDM SQEGYGTRSQ PPMAPGKPNH
410 420 430 440 450
EDLSLIQQER PSSLPVEVLA SEDAAFGLKD LSGSIDDLPT GTEATLSSAV
460 470 480 490 500
SASGSTSSQG DQSNPAQSPF SPHASPHLSS IPGGPSPSPV GSPVGSNQSR
510 520 530 540 550
SGPISPASIP GSQMPPQPPG SQSESSSHPA LSQSPMPQER GFMTGTQRNP
560 570 580 590 600
QMSQYGPQQT GPSMSPHPSP GGQIHPGISS FQQSNSSGAY GPQMSQYGPQ
610 620 630 640 650
GNYSRPPTYS GVPSASYSGP GPGMGINANN QMHGQGPSQP CGTMPLGRMP
660 670 680 690 700
STGMQSRPFP GNMSSMTPNS PGMAQQGGPG MGPPMPTVNR KAQEAAAAVM
710 720 730 740 750
QAAANSAQSR PPYIRSPAYP SQSGAGGRPM FSSQHPNYGN AQAPMMHQPD
760 770 780 790 800
QYGQGSFPGM NQSGLMGSSS PYSQPMNNSS SLMNPQAPQY SMTPNMVNSS
810 820 830 840 850
TASMGLADMM SPGESKLPVP LKADSKEEGA PQPESKSKDS YSSQGISQPP
860 870 880 890 900
TPGNLPVPSP MSPSSASISS FHGDESDSIS SPGWPKTPSS PKSSSSTTTG
910 920 930 940 950
EKITRVYELG NEPERKLWVD RYLTFMEERG SPVTSLPAVG KKPLDLFRLY
960 970 980 990 1000
VCVKEIGGLA QVNKNKKWRE LATNLNVGTS SSAASSLKKQ YIQYLFAFEC
1010 1020 1030 1040 1050
KIERGEEPPP EVFSTGDTKK QAKIQPPSPA NSGSLQGPQT PQSTGSNSMA
1060 1070 1080 1090 1100
EVPGDLKPPT PASTPHGQMT PMPGGRNSAV SVHDPFSDVS DSSFTKRNSM
1110 1120 1130 1140 1150
TPNAPYQQGM NIPDMMGRMP YEPNKDPFGG MRKVSGSNEP FMTPGQIPNS
1160 1170 1180 1190 1200
GMQDMYNQAP TGAMSNMGMS QRQQFPYGAS YDRRHEPYGQ QYPGQGPPSG
1210 1220 1230 1240 1250
QPPYGGHQPG IYPQQPNYKR HMDGMYGPPA KRHEGDMYNV QYGSQQQEMY
1260 1270 1280 1290 1300
NQYGTTYSGP DRRPIQGQYP YPYNRERMQG PGQMQQHGLP PQMIGGPMPS
1310 1320 1330 1340 1350
SSSEGPQQNM WPTRNDMPYP YQNRQGPGGP GQAPPYPGMN RSDEMMVPDQ
1360 1370 1380 1390 1400
RINHESQWPS HVNQRQPYMS SSASMQPITR PPQSSYQTPP SMPNHISRAP
1410 1420 1430 1440 1450
SPASFQRSLE NRMSPSKSPF LPSMKMQKVI PSVPASQVTG PPPQPPPIRR
1460 1470 1480 1490 1500
EITFPPGSVE ASQPVLKQRR KITSKDIVTP EAWRVMMSLK SGLLAESTWA
1510 1520 1530 1540 1550
LDTINILLYD DSTVATFNLS QLSGFLELLV EYFRKCLIDI FGILMEYEVG
1560 1570 1580 1590 1600
DPSQKALDHN TNKKEDSQSL ADDSGKEEED EAECIDYYDE EDEEEEEEEE
1610 1620 1630 1640 1650
EEKTGGAEDK STAFASPDAS VDPKERPKQA SKFDKLPIKI VKKNNLFVVD
1660 1670 1680 1690 1700
RSDKLGRVQE FNSGLLHWQL GGGDTTEHIQ THFESKMEIP PRRRAPPALS
1710 1720 1730 1740 1750
SLGKKKDSEG RSDFEEPPEK SIIATIDDVL SAWPGALPED ANPSTQPESS
1760 1770 1780 1790 1800
KFPFGIHEAK SHRNIKLLED EPRSRDETPL CTIAHWQDSL AKRCICVSNI
1810 1820 1830 1840 1850
VRSLSFVPGN DAEMSKHPGL VLILGKLILL HHEHPERKRA PQTYEKEDEE
1860 1870 1880 1890 1900
DKGVTCSKDE WWWDCLEVLR DNTLVTLANI SGQLDLSAYT ESICLPILDG
1910 1920 1930 1940 1950
LLHWMVCPSA EAQDPFPTVG PNSVLSPQRL VLETLCKLSI QDNNVDLILA
1960 1970 1980 1990 2000
TPPFSRQEKL YATLVRYVGD RKNPVCREMS MALLSNLAQG DALAARAIAV
2010 2020 2030 2040 2050
QKGSIGNLIS FLEDGVTMAQ YQQSQHNLMH MQPPPLEPPS VDMMCRAAKA
2060 2070 2080 2090
LLAMARVDEN RSEFLLHEGR LLDISISAVL NSLVASVICD VLFQIGQL
Length:2,098
Mass (Da):222,822
Last modified:December 11, 2019 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDFB31920383A8FD7
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A5F8G5L5A0A5F8G5L5_MONDO
AT-rich interaction domain 1B
ARID1B
1,542Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A5F8GGZ0A0A5F8GGZ0_MONDO
AT-rich interaction domain 1B
ARID1B
2,115Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A5F8GUZ8A0A5F8GUZ8_MONDO
AT-rich interaction domain 1B
ARID1B
2,068Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A5F8HCG4A0A5F8HCG4_MONDO
AT-rich interaction domain 1B
ARID1B
1,482Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A5F8HCS4A0A5F8HCS4_MONDO
AT-rich interaction domain 1B
ARID1B
1,532Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMODT00000010235; ENSMODP00000010042; ENSMODG00000008068

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi13616.ENSMODP00000010042

Genome annotation databases

EnsembliENSMODT00000010235; ENSMODP00000010042; ENSMODG00000008068

Phylogenomic databases

eggNOGiKOG2510 Eukaryota
ENOG410Y034 LUCA
GeneTreeiENSGT00940000155634
InParanoidiF6YJT2
OMAiGQMQQHG
TreeFamiTF320364

Gene expression databases

BgeeiENSMODG00000008068 Expressed in 7 organ(s), highest expression level in cerebellum

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR021906 BAF250/Osa
IPR033388 BAF250_C
PANTHERiPTHR12656 PTHR12656, 1 hit
PTHR12656:SF11 PTHR12656:SF11, 1 hit
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF12031 BAF250_C, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF6YJT2_MONDO
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F6YJT2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: December 11, 2019
Last modified: December 11, 2019
This is version 52 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again