UniProtKB - F6XSF3 (F6XSF3_CIOIN)
Protein
Submitted name:
Uncharacterized protein
Gene
N/A
Organism
Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis)
Status
Functioni
GO - Molecular functioni
- deoxyribonuclease I activity Source: GO_Central
- pre-miRNA binding Source: Ensembl
- ribonuclease III activity Source: GO_Central
GO - Biological processi
- apoptotic DNA fragmentation Source: GO_Central
- mRNA cleavage involved in gene silencing by miRNA Source: Ensembl
- pre-miRNA processing Source: GO_Central
- production of siRNA involved in RNA interference Source: GO_Central
- regulation of neurogenesis Source: Ensembl
- ventricular system development Source: Ensembl
Keywordsi
Molecular function | RNA-bindingPROSITE-ProRule annotation |
Biological process | RNA-mediated gene silencingSAAS annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Uncharacterized proteinImported |
Organismi | Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis)Imported |
Taxonomic identifieri | 7719 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Tunicata › Ascidiacea › Enterogona › Phlebobranchia › Cionidae › Ciona |
Proteomesi |
|
Subcellular locationi
Nucleus
- nucleus Source: GO_Central
Other locations
- cytoplasm Source: GO_Central
- RISC complex Source: GO_Central
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 33 – 209 | Helicase ATP-bindingInterPro annotationAdd BLAST | 177 | |
Domaini | 424 – 587 | Helicase C-terminalInterPro annotationAdd BLAST | 164 | |
Domaini | 615 – 711 | Dicer dsRNA-binding foldInterPro annotationAdd BLAST | 97 | |
Domaini | 892 – 1037 | PAZInterPro annotationAdd BLAST | 146 | |
Domaini | 1281 – 1350 | RNase IIIInterPro annotationAdd BLAST | 70 | |
Domaini | 1625 – 1783 | RNase IIIInterPro annotationAdd BLAST | 159 | |
Domaini | 1808 – 1872 | DRBMInterPro annotationAdd BLAST | 65 |
Sequence similaritiesi
Phylogenomic databases
eggNOGi | KOG0701 Eukaryota COG0571 LUCA |
GeneTreei | ENSGT00940000156287 |
InParanoidi | F6XSF3 |
OMAi | PKPDQPC |
TreeFami | TF330258 |
Family and domain databases
CDDi | cd00048 DSRM, 1 hit cd00593 RIBOc, 2 hits |
Gene3Di | 1.10.1520.10, 1 hit 3.30.160.380, 1 hit |
InterProi | View protein in InterPro IPR038248 Dicer_dimer_sf IPR005034 Dicer_dimerisation_dom IPR014720 dsRBD_dom IPR014001 Helicase_ATP-bd IPR001650 Helicase_C IPR027417 P-loop_NTPase IPR003100 PAZ_dom IPR036085 PAZ_dom_sf IPR000999 RNase_III_dom IPR036389 RNase_III_sf |
Pfami | View protein in Pfam PF03368 Dicer_dimer, 1 hit PF00271 Helicase_C, 1 hit PF02170 PAZ, 1 hit PF00636 Ribonuclease_3, 2 hits |
SMARTi | View protein in SMART SM00358 DSRM, 1 hit SM00949 PAZ, 1 hit SM00535 RIBOc, 2 hits |
SUPFAMi | SSF101690 SSF101690, 1 hit SSF52540 SSF52540, 1 hit SSF69065 SSF69065, 2 hits |
PROSITEi | View protein in PROSITE PS51327 DICER_DSRBF, 1 hit PS50137 DS_RBD, 1 hit PS51192 HELICASE_ATP_BIND_1, 1 hit PS51194 HELICASE_CTER, 1 hit PS50821 PAZ, 1 hit PS00517 RNASE_3_1, 1 hit PS50142 RNASE_3_2, 2 hits |
i Sequence
Sequence statusi: Complete.
F6XSF3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MLSSGSSQEP GKPSWTSNSQ CNSFIPRPYQ IELLECAAKQ NTIICLNGDF
60 70 80 90 100
GKCFMYTMFL REVIIKHNGK LNNAPKFAVL LLKEDCMVNE QSELLRSHLD
110 120 130 140 150
VDIISCTHNM TDSFTDESLQ QLCHDHQVLV CTPEVFVKLL SISLYIAQYM
160 170 180 190 200
DLVIFDDCHL VNIEMHPIRK IMKILDENRY TPMILGLTSS LLNNNITADE
210 220 230 240 250
LNKCIHSMET VMHCKAQTAT DLIAVDRHNI NPPVENIILS SDENKDGLNS
260 270 280 290 300
QLLSDIRKIL NGALEWLNSC QKEKQEEDLD VCTVAIQLIN ESLMVADVLG
310 320 330 340 350
PWCVYQLIVV VLKQLQKNLH LINVHAVMLQ YVQTKFKMVY SICHWYMGDQ
360 370 380 390 400
KAVNLAFVAP KVHRLIQVLK EYKPVVEGEE KQNTSFKYNN RNESDYVSWW
410 420 430 440 450
QDSDAEDEDA DMMEGKKEEK EDENHPSLFI NTLCGIVFVE ERYVAMMLQR
460 470 480 490 500
LLRELSKEDK NLKHVSSSHL TPGVEGERRG VDPASMDQSK QEEVLRKFRS
510 520 530 540 550
HESNLLICTG DLEDCAYMPK CNLIMRFDVP KSYRSYAESK SRARAQTSAY
560 570 580 590 600
VMLVRETEKS HFMEKLQEYK KIEKVLLGPD WSLNEVYDNN EDDDIEEMIP
610 620 630 640 650
PYILNRNTQV NMKNAVRIVN RYCNRLPSDP FTHLSPRCEV VEVLNDGDSP
660 670 680 690 700
MFMCILQLPI NSHVREPVQG IVMPTLQLAQ QAVAMETCKV LYEAGELDEN
710 720 730 740 750
LMPIGKETVK YAEELDPWKR EVSSITGRPG STKKRQTYNK DSPQILRSCL
760 770 780 790 800
PQPDINLFIY EIEMKIKNPL LDELNVRRRK LFFPEETSRC FGILTTKPIP
810 820 830 840 850
QIPGFPIFTR SGEESAKLKF CRGFVQLSAQ QIKLVRIFHR YVFSDMLRVD
860 870 880 890 900
RVPLSFQPEK STSQLLVVVL NKANSSQLNI DWSFMMKTES KRRVIEKMKS
910 920 930 940 950
DPWYKHKMNE QNKVFVFNRQ LYEDGVVVAK YRSCDQPNRF YVAELKDDMT
960 970 980 990 1000
PLSSFPSSEY ESFLHYYQLK YGLDIRCLKQ PLLDVDHTSS RLNLLTPRHL
1010 1020 1030 1040 1050
NQKGKALPMS SLEKKRAKYE SLHNRQILVP ELCEVHPIPA SLWRKAVCLP
1060 1070 1080 1090 1100
SVLYRVNQLL IAEELRKNIA FKSGITMEQP PIGNMWQNLH FGWTDNEDSD
1110 1120 1130 1140 1150
DDNVDEISSE NNEVLNENKN VFDENIPKVP NSVENDGECA QHDNLEETNH
1160 1170 1180 1190 1200
KQNQHVDFEN STAKSDVYKT TVINHMKENH DEDDYVHVHG SNDVNVHKKN
1210 1220 1230 1240 1250
INHDNDSDRI GDTAHDYEAH FDLSDHEDEN MKNNVNDSLA SIRGCKKKIK
1260 1270 1280 1290 1300
DVENPIWISS DVIDDYNKEN PVKNLGPGPG LILQALTLSN ASDGFNLERL
1310 1320 1330 1340 1350
EMLGDSFLKH AVTVYLYCTY PESHEGKLSY MRSKKVSNYN LYRIGKQFGL
1360 1370 1380 1390 1400
AGKMTGLIFD PTVNWLPTGF VVGASGQGQD SDEDISDDDV EIVDPPPSLP
1410 1420 1430 1440 1450
PSTINDEEEI YEEDEIRMID GMLGGCIRTL GGSPKGDNGL FGLGKKISKN
1460 1470 1480 1490 1500
IGHALSSHQS MHFTDKAALR RSQLNKQNLE DFVIDTWTPV DASGKPLNNS
1510 1520 1530 1540 1550
DPLMLDLHTQ HSLADKSIAD CVEALLGAYL TTCGHRSAQL LLCHLGLNIF
1560 1570 1580 1590 1600
YAFKETNVCK TTPFQNTKIS MENINHAFTK VLPKVAQAET SKTVDRFGYL
1610 1620 1630 1640 1650
TPPTNKMLEC RPNQQNKLDQ LLVALSGFER KINYTFKNKA YLLQAFTHAS
1660 1670 1680 1690 1700
YYYNTVTDCY QRLEFLGDAV LDFLITRHLF NDERHHSPGA LTDLRSALVN
1710 1720 1730 1740 1750
NTIFASLAVH YDFHKYFKSI SPELHHIIED FVMYQQKQED AQGMDAHLMR
1760 1770 1780 1790 1800
KDEEEGENED VEVPKALGDI FESVAGAIYM DSGMDLSSVW KVYSVMMLPL
1810 1820 1830 1840 1850
IEKFSACVPR SPVRELLEME PETAKFSCAE KRYDGKVRVT VEIIGKGRFK
1860 1870
GVGRSYRIAK SAAARRALRY LK
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | EAAA01000779 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENSCINT00000017117; ENSCINP00000017117; ENSCING00000008383 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | EAAA01000779 Genomic DNA No translation available. |
3D structure databases
ModBasei | Search... |
MobiDBi | Search... |
Protein-protein interaction databases
STRINGi | 7719.ENSCINP00000017117 |
Protocols and materials databases
Structural Biology Knowledgebase | Search... |
Genome annotation databases
Ensembli | ENSCINT00000017117; ENSCINP00000017117; ENSCING00000008383 |
Phylogenomic databases
eggNOGi | KOG0701 Eukaryota COG0571 LUCA |
GeneTreei | ENSGT00940000156287 |
InParanoidi | F6XSF3 |
OMAi | PKPDQPC |
TreeFami | TF330258 |
Family and domain databases
CDDi | cd00048 DSRM, 1 hit cd00593 RIBOc, 2 hits |
Gene3Di | 1.10.1520.10, 1 hit 3.30.160.380, 1 hit |
InterProi | View protein in InterPro IPR038248 Dicer_dimer_sf IPR005034 Dicer_dimerisation_dom IPR014720 dsRBD_dom IPR014001 Helicase_ATP-bd IPR001650 Helicase_C IPR027417 P-loop_NTPase IPR003100 PAZ_dom IPR036085 PAZ_dom_sf IPR000999 RNase_III_dom IPR036389 RNase_III_sf |
Pfami | View protein in Pfam PF03368 Dicer_dimer, 1 hit PF00271 Helicase_C, 1 hit PF02170 PAZ, 1 hit PF00636 Ribonuclease_3, 2 hits |
SMARTi | View protein in SMART SM00358 DSRM, 1 hit SM00949 PAZ, 1 hit SM00535 RIBOc, 2 hits |
SUPFAMi | SSF101690 SSF101690, 1 hit SSF52540 SSF52540, 1 hit SSF69065 SSF69065, 2 hits |
PROSITEi | View protein in PROSITE PS51327 DICER_DSRBF, 1 hit PS50137 DS_RBD, 1 hit PS51192 HELICASE_ATP_BIND_1, 1 hit PS51194 HELICASE_CTER, 1 hit PS50821 PAZ, 1 hit PS00517 RNASE_3_1, 1 hit PS50142 RNASE_3_2, 2 hits |
ProtoNeti | Search... |
Entry informationi
Entry namei | F6XSF3_CIOIN | |
Accessioni | F6XSF3Primary (citable) accession number: F6XSF3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | July 27, 2011 |
Last sequence update: | April 18, 2012 | |
Last modified: | January 16, 2019 | |
This is version 52 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |