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Protein
Submitted name:

Uncharacterized protein

Gene

SNRNP40

Organism
Monodelphis domestica (Gray short-tailed opossum)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:SNRNP40Imported
OrganismiMonodelphis domestica (Gray short-tailed opossum)Imported
Taxonomic identifieri13616 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaMetatheriaDidelphimorphiaDidelphidaeMonodelphis
Proteomesi
  • UP000002280 Componenti: Chromosome 4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSMODG00000017078 Expressed in 7 organ(s), highest expression level in testis

Interactioni

Protein-protein interaction databases

STRINGi13616.ENSMODP00000021306

Structurei

3D structure databases

ProteinModelPortaliF6VKV2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini66 – 361WD_REPEATS_REGIONInterPro annotationAdd BLAST296
Repeati66 – 99WDPROSITE-ProRule annotationAdd BLAST34
Repeati109 – 150WDPROSITE-ProRule annotationAdd BLAST42
Repeati151 – 193WDPROSITE-ProRule annotationAdd BLAST43
Repeati193 – 234WDPROSITE-ProRule annotationAdd BLAST42
Repeati235 – 269WDPROSITE-ProRule annotationAdd BLAST35
Repeati296 – 326WDPROSITE-ProRule annotationAdd BLAST31
Repeati327 – 361WDPROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
InParanoidiF6VKV2
KOiK12857
OMAiGDCENYG
OrthoDBiEOG091G0DR4
TreeFamiTF300039

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

F6VKV2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIEQHKRKGP ELPLVPLKRP RHELLLGAAG PGAGAGPAAG QQPPPGALLQ
60 70 80 90 100
AGPPRCSSLQ APIMLLSGHE GEVYCSKFHP NGSTLASAGF DRLILLWNVY
110 120 130 140 150
GDCDNYATLK GHSGAVMELH YNTDGSMLFS ASTDKTVAVW DSETGERIKR
160 170 180 190 200
LKGHTSFVNS CYPARRGPQL VCTGSDDGTV KLWDIRKKAA VQTFQNTYQV
210 220 230 240 250
LTVTFNDTSD QIISGGIDND IKVWDLRQNK LTYTMRGHAD SVTGLSLSSE
260 270 280 290 300
GSYLLSNAMD NTVRIWDVRP FAPKERCVKI FQGNVHNFEK NLLRCSWSPD
310 320 330 340 350
GSKIAAGSAD RFVYVWDTTS RRILYKLPGH AGSVNEVAFH PDEPIILSAS
360
SDKRLYMGEI Q
Length:361
Mass (Da):39,562
Last modified:July 27, 2011 - v1
Checksum:iD46F54F2958D6CEB
GO

Sequence databases

RefSeqiXP_001367385.1, XM_001367348.4

Genome annotation databases

EnsembliENSMODT00000021680; ENSMODP00000021306; ENSMODG00000017078
GeneIDi100027017
KEGGimdo:100027017

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_001367385.1, XM_001367348.4

3D structure databases

ProteinModelPortaliF6VKV2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi13616.ENSMODP00000021306

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMODT00000021680; ENSMODP00000021306; ENSMODG00000017078
GeneIDi100027017
KEGGimdo:100027017

Organism-specific databases

CTDi9410

Phylogenomic databases

eggNOGiKOG0265 Eukaryota
ENOG410XSEW LUCA
GeneTreeiENSGT00810000125363
InParanoidiF6VKV2
KOiK12857
OMAiGDCENYG
OrthoDBiEOG091G0DR4
TreeFamiTF300039

Gene expression databases

BgeeiENSMODG00000017078 Expressed in 7 organ(s), highest expression level in testis

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 7 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 5 hits
PS50082 WD_REPEATS_2, 7 hits
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiF6VKV2_MONDO
AccessioniPrimary (citable) accession number: F6VKV2
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: October 10, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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