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Protein
Submitted name:

SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)

Gene

SEC22B

Organism
Callithrix jacchus (White-tufted-ear marmoset)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)Imported
Submitted name:
Vesicle-trafficking protein SEC22bImported
Gene namesi
Name:SEC22BImported
OrganismiCallithrix jacchus (White-tufted-ear marmoset)Imported
Taxonomic identifieri9483 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeCallitrichinaeCallithrixCallithrix
Proteomesi
  • UP000008225 Componenti: Unplaced

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei193 – 214HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi9483.ENSCJAP00000037107

Structurei

3D structure databases

SMRiF6UXM5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 119LonginInterPro annotationAdd BLAST114
Domaini134 – 194V-SNARE coiled-coil homologyInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the synaptobrevin family.SAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0862 Eukaryota
COG5143 LUCA
GeneTreeiENSGT00510000046833
KOiK08517
OrthoDBiEOG091G0MPE

Family and domain databases

InterProiView protein in InterPro
IPR011012 Longin-like_dom_sf
IPR010908 Longin_dom
IPR001388 Synaptobrevin
PfamiView protein in Pfam
PF13774 Longin, 1 hit
PF00957 Synaptobrevin, 1 hit
PRINTSiPR00219 SYNAPTOBREVN
SMARTiView protein in SMART
SM01270 Longin, 1 hit
SUPFAMiSSF64356 SSF64356, 1 hit
PROSITEiView protein in PROSITE
PS50859 LONGIN, 1 hit
PS50892 V_SNARE, 1 hit

Sequencei

Sequence statusi: Complete.

F6UXM5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLLTMIARV ADGLPLAASM QEDEQSGRDL QQYQSQAKQL FRKLNEQSPT
60 70 80 90 100
RCTLEAGAMT FHYIIEQGVC YLVLCEAAFP KKLAFAYLED LHSEFDEQHG
110 120 130 140 150
KKVPTVSRPY SFIEFDTFIQ KTKKLYIDSR ARRNLGSINT ELQDVQRIMV
160 170 180 190 200
ANIEEVLQRG EALSALDSKA NNLSSLSKKY RQDAKYLNMR STYAKLAAVA
210
VFFIMLIVYV RFWWL
Length:215
Mass (Da):24,741
Last modified:July 27, 2011 - v1
Checksum:i29B4C55961C5A044
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GAMT01000474 mRNA Translation: JAB11387.1
GAMS01007162 mRNA Translation: JAB15974.1
GAMQ01006694 mRNA Translation: JAB35157.1
GAMP01009521 mRNA Translation: JAB43234.1
RefSeqiXP_017821670.1, XM_017966181.1

Genome annotation databases

EnsembliENSCJAT00000039186; ENSCJAP00000037107; ENSCJAG00000043279
GeneIDi100389503
KEGGicjc:100389503

Similar proteinsi

Entry informationi

Entry nameiF6UXM5_CALJA
AccessioniPrimary (citable) accession number: F6UXM5
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: July 18, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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