UniProtKB - F6TFN5 (F6TFN5_HORSE)
Protein
Submitted name:
Pre-mRNA processing factor 40 homolog B
Gene
PRPF40B
Organism
Equus caballus (Horse)
Status
Names & Taxonomyi
Protein namesi | Submitted name: Pre-mRNA processing factor 40 homolog BImported |
Gene namesi | Name:PRPF40BImported |
Organismi | Equus caballus (Horse)Imported |
Taxonomic identifieri | 9796 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Perissodactyla › Equidae › Equus › |
Proteomesi |
|
Organism-specific databases
VGNCi | VGNC:21888, PRPF40B |
Expressioni
Gene expression databases
Bgeei | ENSECAG00000020691, Expressed in embryo and 23 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 87 – 120 | WWInterPro annotationAdd BLAST | 34 | |
Domaini | 133 – 161 | WWInterPro annotationAdd BLAST | 29 | |
Domaini | 273 – 327 | FFInterPro annotationAdd BLAST | 55 | |
Domaini | 337 – 394 | FFInterPro annotationAdd BLAST | 58 | |
Domaini | 407 – 467 | FFInterPro annotationAdd BLAST | 61 | |
Domaini | 487 – 547 | FFInterPro annotationAdd BLAST | 61 | |
Domaini | 551 – 607 | FFInterPro annotationAdd BLAST | 57 | |
Domaini | 622 – 679 | FFInterPro annotationAdd BLAST | 58 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 31 | DisorderedSequence analysisAdd BLAST | 31 | |
Regioni | 140 – 274 | DisorderedSequence analysisAdd BLAST | 135 | |
Regioni | 687 – 806 | DisorderedSequence analysisAdd BLAST | 120 | |
Regioni | 841 – 875 | DisorderedSequence analysisAdd BLAST | 35 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 314 – 353 | Sequence analysisAdd BLAST | 40 | |
Coiled coili | 396 – 416 | Sequence analysisAdd BLAST | 21 | |
Coiled coili | 451 – 491 | Sequence analysisAdd BLAST | 41 | |
Coiled coili | 601 – 626 | Sequence analysisAdd BLAST | 26 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 154 – 170 | PolyampholyteSequence analysisAdd BLAST | 17 | |
Compositional biasi | 185 – 208 | Pro-richSequence analysisAdd BLAST | 24 | |
Compositional biasi | 237 – 252 | PolarSequence analysisAdd BLAST | 16 | |
Compositional biasi | 253 – 274 | PolyampholyteSequence analysisAdd BLAST | 22 | |
Compositional biasi | 689 – 707 | BasicSequence analysisAdd BLAST | 19 | |
Compositional biasi | 708 – 736 | PolyampholyteSequence analysisAdd BLAST | 29 | |
Compositional biasi | 774 – 792 | BasicSequence analysisAdd BLAST | 19 | |
Compositional biasi | 850 – 868 | PolarSequence analysisAdd BLAST | 19 |
Keywords - Domaini
Coiled coilSequence analysisPhylogenomic databases
GeneTreei | ENSGT00930000150980 |
HOGENOMi | CLU_005825_0_0_1 |
Family and domain databases
CDDi | cd00201, WW, 2 hits |
Gene3Di | 1.10.10.440, 5 hits |
InterProi | View protein in InterPro IPR002713, FF_domain IPR036517, FF_domain_sf IPR039726, Prp40-like IPR001202, WW_dom IPR036020, WW_dom_sf |
PANTHERi | PTHR11864, PTHR11864, 1 hit |
Pfami | View protein in Pfam PF01846, FF, 2 hits PF00397, WW, 2 hits |
SMARTi | View protein in SMART SM00441, FF, 4 hits SM00456, WW, 2 hits |
SUPFAMi | SSF51045, SSF51045, 2 hits SSF81698, SSF81698, 5 hits |
PROSITEi | View protein in PROSITE PS51676, FF, 6 hits PS01159, WW_DOMAIN_1, 1 hit PS50020, WW_DOMAIN_2, 2 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 5 potential isoforms that are computationally mapped.Show allAlign All
F6TFN5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MMPPPGIPPP FPPMGLPPMS QRPPAIPPMP PGIMPPMLPP MGAPPPLTQI
60 70 80 90 100
PGMVPPMMPG MLMPAVPVTA ATAPGADTAS SAVGGTGPPR ALWSEHVAPD
110 120 130 140 150
GRIYYYNADD KQSVWEKPSV LKSKAELLLS QCPWKEYKSD TGKPYYYNNQ
160 170 180 190 200
SKESRWTRPK DLDDLEALVK QEAAGKQQQQ LPQTLQPQPP QPQPDPPPAP
210 220 230 240 250
PGPTSVPTGL LEPEPGGSED CDVSEAAQPL EQGFLQQPEE GPSSSAGQHQ
260 270 280 290 300
PPQQEEEESK PEPERSGLSW SNREKAKQAF KELLRDKAVP SNASWEQAMK
310 320 330 340 350
MVVTDPRYSA LPKLSEKKQA FNAYKAQREK EEKEEARLRA KEAKQTLQHF
360 370 380 390 400
LEQHERMTST TRYRRAEQTF GELEVWAVVP ERDRKEVYDD VLFFLAKKEK
410 420 430 440 450
EQAKQLRRRN IQALKSILDG MSSVNFQTTW SQAQQYLMDN PSFAQDHQLQ
460 470 480 490 500
NMDKEDALIC FEEHIRALER EEEEERERAR LRERRQQRKN REAFQTFLDE
510 520 530 540 550
LHETGQLHSM STWMELYPAV STDVRFANML GQPGSTPLDL FKFYVEELKA
560 570 580 590 600
RFHDEKKIIK DILKDRGFCV EVNTAFEDFA HVISFDKRAA ALDAGNIKLT
610 620 630 640 650
FNSLLEKAEA REREREKEEA RRMRRREAAF RSMLRQAVPA LELGTAWEEV
660 670 680 690 700
RERFVCDSAF EQITLESERI RLFREFLQVL ETECQHLHTK GRKHGRKGKK
710 720 730 740 750
HHRKRSHSPS GSESEEEELP PPSLRPSKRR RRNPSESGSE PSSSLDSGES
760 770 780 790 800
GGAALGGRGS PSSRLLLGSD HGLRKAKKPK KKTKKRRHKS VRREGTSTQG
810 820 830 840 850
PAVCEVSSTR LLGCPSQELR GALGSYRTVL RVRQTLRRKL ARRVMKKSQN
860 870
RTRTGSSGEQ SSLTAPQALE SRRRR
Computationally mapped potential isoform sequencesi
There are 5 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A3Q2L573 | A0A3Q2L573_HORSE | Pre-mRNA processing factor 40 homol... | PRPF40B | 994 | Annotation score: | ||
F6U4T4 | F6U4T4_HORSE | Pre-mRNA processing factor 40 homol... | PRPF40B | 895 | Annotation score: | ||
A0A3Q2HBA3 | A0A3Q2HBA3_HORSE | Pre-mRNA processing factor 40 homol... | PRPF40B | 867 | Annotation score: | ||
A0A3Q2HB01 | A0A3Q2HB01_HORSE | Pre-mRNA processing factor 40 homol... | PRPF40B | 874 | Annotation score: | ||
A0A5F5PFC2 | A0A5F5PFC2_HORSE | Pre-mRNA processing factor 40 homol... | PRPF40B | 828 | Annotation score: |
Genome annotation databases
Ensembli | ENSECAT00000022634; ENSECAP00000018713; ENSECAG00000020691 |
Similar proteinsi
Cross-referencesi
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSECAT00000022634; ENSECAP00000018713; ENSECAG00000020691 |
Organism-specific databases
VGNCi | VGNC:21888, PRPF40B |
Phylogenomic databases
GeneTreei | ENSGT00930000150980 |
HOGENOMi | CLU_005825_0_0_1 |
Gene expression databases
Bgeei | ENSECAG00000020691, Expressed in embryo and 23 other tissues |
Family and domain databases
CDDi | cd00201, WW, 2 hits |
Gene3Di | 1.10.10.440, 5 hits |
InterProi | View protein in InterPro IPR002713, FF_domain IPR036517, FF_domain_sf IPR039726, Prp40-like IPR001202, WW_dom IPR036020, WW_dom_sf |
PANTHERi | PTHR11864, PTHR11864, 1 hit |
Pfami | View protein in Pfam PF01846, FF, 2 hits PF00397, WW, 2 hits |
SMARTi | View protein in SMART SM00441, FF, 4 hits SM00456, WW, 2 hits |
SUPFAMi | SSF51045, SSF51045, 2 hits SSF81698, SSF81698, 5 hits |
PROSITEi | View protein in PROSITE PS51676, FF, 6 hits PS01159, WW_DOMAIN_1, 1 hit PS50020, WW_DOMAIN_2, 2 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F6TFN5_HORSE | |
Accessioni | F6TFN5Primary (citable) accession number: F6TFN5 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | July 27, 2011 |
Last sequence update: | April 10, 2019 | |
Last modified: | August 12, 2020 | |
This is version 45 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |