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Protein
Submitted name:

Transcription factor protein

Gene

brachyury

Organism
Ciona intestinalis (Transparent sea squirt) (Ascidia intestinalis)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor proteinImported
Gene namesi
Name:brachyuryImported
OrganismiCiona intestinalis (Transparent sea squirt) (Ascidia intestinalis)Imported
Taxonomic identifieri7719 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataTunicataAscidiaceaEnterogonaPhlebobranchiaCionidaeCiona
Proteomesi
  • UP000008144 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi7719.ENSCINP00000001477

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3585 Eukaryota
ENOG410XSTS LUCA
GeneTreeiENSGT00900000140847
HOVERGENiHBG004599
InParanoidiF6RP59
OMAiFHAFVNE
OrthoDBiEOG091G05OC
TreeFamiTF106341

Family and domain databases

CDDicd00182 TBOX, 1 hit
Gene3Di2.60.40.820, 1 hit
InterProiView protein in InterPro
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR002070 TF_Brachyury
IPR001699 TF_T-box
IPR018186 TF_T-box_CS
PANTHERiPTHR11267 PTHR11267, 1 hit
PfamiView protein in Pfam
PF00907 T-box, 1 hit
PRINTSiPR00938 BRACHYURY
PR00937 TBOX
SMARTiView protein in SMART
SM00425 TBOX, 1 hit
SUPFAMiSSF49417 SSF49417, 1 hit
PROSITEiView protein in PROSITE
PS01283 TBOX_1, 1 hit
PS01264 TBOX_2, 1 hit
PS50252 TBOX_3, 1 hit

Sequencei

Sequence statusi: Complete.

F6RP59-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSSDSKLAG MTSSESIETC AVKMALIEHG LWSRFHAFVN EMIVTKNGRR
60 70 80 90 100
MFPVLKTSIT GLDPTAMYSV MLDFVPVDNN RWKYVNGEWI PGGKPEPHVS
110 120 130 140 150
SCAYIHPDSP NFGSHWMKQP VGFSRVKLTN KATGNPQQIM LNSLHKYEPR
160 170 180 190 200
IHIMRVGGAE SQQVVASHSF QETRFIAVTA YQNEDVTSLK IKYNPFAKAF
210 220 230 240 250
LDAKERSGSE NYFKDSTKAG SSQNYSRANT WTANQSNPTF NQCQYESGIP
260 270 280 290 300
PFHYPIPNQP KTTRERRMSR TQRSHPYKPS TTQIYQDFQP TNYPALPNDQ
310 320 330 340 350
WQSSIEGHEL DEGHFSLEPV SVDDVTALGF DTPHQGFATN DLLSIEPSYS
360 370 380 390 400
LDYPQFTTTW SYPTNHMPGY VSNSPIRSLE QPEYFYRGYD VSQQNYVTMT
410 420 430
SADVSNVTSS LYETPSPGVM QRPQEDFSIA YTPLTPPSL
Length:439
Mass (Da):49,637
Last modified:April 18, 2012 - v1
Checksum:i9A13C30FB65E1094
GO

Genome annotation databases

EnsembliENSCINT00000001477; ENSCINP00000001477; ENSCING00000000810

Similar proteinsi

Entry informationi

Entry nameiF6RP59_CIOIN
AccessioniPrimary (citable) accession number: F6RP59
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2012
Last sequence update: April 18, 2012
Last modified: September 12, 2018
This is version 45 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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