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Protein
Submitted name:

Nuclear transcription factor Y subunit alpha

Gene

nfya

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
Nuclear transcription factor Y subunit alphaImported
Gene namesi
Name:nfyaImported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-942007 nfya

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiF6QN52

Expressioni

Gene expression databases

BgeeiENSXETG00000011865 Expressed in 16 organ(s), highest expression level in egg cell
ExpressionAtlasiF6QN52 baseline

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000054632

Family & Domainsi

Phylogenomic databases

eggNOGiKOG1561 Eukaryota
COG5224 LUCA
GeneTreeiENSGT00390000015714
InParanoidiF6QN52
OMAiTQMIRVS
OrthoDBiEOG091G0JVF
TreeFamiTF323257

Family and domain databases

InterProiView protein in InterPro
IPR018362 CCAAT-binding_factor_CS
IPR001289 NFYA
PANTHERiPTHR12632 PTHR12632, 1 hit
PfamiView protein in Pfam
PF02045 CBFB_NFYA, 1 hit
PRINTSiPR00616 CCAATSUBUNTB
SMARTiView protein in SMART
SM00521 CBF, 1 hit
PROSITEiView protein in PROSITE
PS00686 NFYA_HAP2_1, 1 hit
PS51152 NFYA_HAP2_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

F6QN52-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEQFTSSNGS PEQIVVQAGQ IQQQEPGAVT AVQLQTEAQV GAASGQQVQT
60 70 80 90 100
LQVEVQGQPL MVQVSGGQLI TSTGQPIMVQ AMGGQGQTLM QVPVSGSQGL
110 120 130 140 150
QQIQLVQPGQ IQIQGGQAVQ VQAQQGQPQQ IIIQQPQTAV TAGQSQNQQQ
160 170 180 190 200
IAVQGQQVAQ TAEGQTIVYQ PVNADGTILQ QGMITIPAAS LAGAQIVQAG
210 220 230 240 250
ANTNTTNSGQ GTVTVTLPVT GNMMNSGGMV MMVPGAGTVP TLQRIPLPGA
260 270 280 290 300
EMLEEEPLYV NAKQYHRILK RRQARAKLEA EGKIPKERRK YLHESRHRHA
310 320
MARKRGDGGR FFSPKEKESH HLQDVEFH
Length:328
Mass (Da):35,076
Last modified:July 27, 2011 - v1
Checksum:iC42BA7DEA0DF3F88
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F7ACY8F7ACY8_XENTR
Nuclear transcription factor Y subu...
nfya
297Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01017787 Genomic DNA No translation available.
AAMC01017788 Genomic DNA No translation available.
AAMC01017789 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSXETT00000054632; ENSXETP00000054632; ENSXETG00000011865

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01017787 Genomic DNA No translation available.
AAMC01017788 Genomic DNA No translation available.
AAMC01017789 Genomic DNA No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000054632

Proteomic databases

PaxDbiF6QN52

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSXETT00000054632; ENSXETP00000054632; ENSXETG00000011865

Organism-specific databases

XenbaseiXB-GENE-942007 nfya

Phylogenomic databases

eggNOGiKOG1561 Eukaryota
COG5224 LUCA
GeneTreeiENSGT00390000015714
InParanoidiF6QN52
OMAiTQMIRVS
OrthoDBiEOG091G0JVF
TreeFamiTF323257

Gene expression databases

BgeeiENSXETG00000011865 Expressed in 16 organ(s), highest expression level in egg cell
ExpressionAtlasiF6QN52 baseline

Family and domain databases

InterProiView protein in InterPro
IPR018362 CCAAT-binding_factor_CS
IPR001289 NFYA
PANTHERiPTHR12632 PTHR12632, 1 hit
PfamiView protein in Pfam
PF02045 CBFB_NFYA, 1 hit
PRINTSiPR00616 CCAATSUBUNTB
SMARTiView protein in SMART
SM00521 CBF, 1 hit
PROSITEiView protein in PROSITE
PS00686 NFYA_HAP2_1, 1 hit
PS51152 NFYA_HAP2_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiF6QN52_XENTR
AccessioniPrimary (citable) accession number: F6QN52
Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 12, 2018
This is version 32 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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