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Entry version 52 (29 Sep 2021)
Sequence version 1 (27 Jul 2011)
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Protein

USP domain-containing protein

Gene

VIT_17s0000g05500

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase, Protease, Thiol proteaseARBA annotation
Biological processUbl conjugation pathwayARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
USP domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:VIT_17s0000g05500Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVitis vinifera (Grape)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri29760 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeViteaeVitis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009183 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 17

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
F6GTB6

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1270 – 1602USPInterPro annotationAdd BLAST333

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni208 – 227DisorderedSequence analysisAdd BLAST20
Regioni240 – 277DisorderedSequence analysisAdd BLAST38
Regioni915 – 994DisorderedSequence analysisAdd BLAST80

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili740 – 767Sequence analysisAdd BLAST28
Coiled coili1200 – 1220Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi918 – 951Basic and acidic residuesSequence analysisAdd BLAST34
Compositional biasi954 – 970Polar residuesSequence analysisAdd BLAST17
Compositional biasi978 – 994Basic and acidic residuesSequence analysisAdd BLAST17

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1887, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001131_1_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F6GTB6

Identification of Orthologs from Complete Genome Data

More...
OMAi
EIDDAWA

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006866, DUF627_N
IPR006865, DUF629
IPR038765, Papain-like_cys_pep_sf
IPR001394, Peptidase_C19_UCH
IPR011990, TPR-like_helical_dom_sf
IPR028889, USP_dom
IPR013087, Znf_C2H2_type

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04781, DUF627, 1 hit
PF04780, DUF629, 1 hit
PF00443, UCH, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF54001, SSF54001, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50235, USP_3, 1 hit
PS00028, ZINC_FINGER_C2H2_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F6GTB6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVTGVESEGS AYSAIKLECE RSLTALRRGN HNKALRIMKE LSVRHDNSVH
60 70 80 90 100
SALIHRVQGT VCVKVASIID DPNAKQRHLK NAIETAKKAV ELSPNSIEFA
110 120 130 140 150
HFYANLLYEA ASEGKEYEEV VHECERALSI DSPVDPAKES LQDESQQKIS
160 170 180 190 200
TVEARIGHVQ NELRSLIQKS NIASISTWMK NLGNGEEKFR LIPIRRVSED
210 220 230 240 250
PMEVRLVQSK RPNEIKKATK TQEERRKEIE VRVAAARLLQ QKSDAPQSQS
260 270 280 290 300
EGDRTDKASE TSSGPGQRVG ERRKNARKFG STVERKVRVR SYWNSMSFNM
310 320 330 340 350
RKDLLKIRIS DLKAHFSSVK DGLASGVLSE ALSFVEVNKV WKFWVCCRCG
360 370 380 390 400
EKFKDSELHM QHVVQEHMGN LLPKMQSVLP QNIDNEWIEM IVNCSWKPLD
410 420 430 440 450
ISAAVKMLKN ESKCQQNELI DEFYTGNNTE ECIDCFKDAW ESSPEKGMLG
460 470 480 490 500
DGCSCGNLVK SDSDKIPNQG SRECDGNEGS KAYLLANSWP LADDSERAKL
510 520 530 540 550
LEKIHVLFEM LIKHKCLAGS HLSKVMQFTT DELQGIASGS QLLNYGVDQT
560 570 580 590 600
PTCICFLGAS QLRKLLKFLQ ELSHACGLAR SSDKTSSAMD DANSLNRDFD
610 620 630 640 650
IKENVLLNGD ASCLLLDEHL LPTENTSTAS HVAVTDDAAT ETSPIICNEN
660 670 680 690 700
GVQPDGGSLL SWIFTGPSSV EQLASWMRIR EEKSNQGMEI LQMLEKEFYH
710 720 730 740 750
LQSLCERKCE HLSYEEALQA VEDLCLEEGK KRENVTDFGS RSLESVLRKR
760 770 780 790 800
REELRESENE VMLISNRFEL DAVINVLKEA ESLNMNQFGY EEHYNGVTSH
810 820 830 840 850
LCDLESGEDD DWRSKDFLHQ MDACIEVAIQ RQKEQLSVEL SKIDARIMRN
860 870 880 890 900
VTGMQQLELT LEPVSAFDYR SIILPLLKSF MRAHLEDLAE KDATQKSDAA
910 920 930 940 950
REAFLAELAL DSKKSAIGGS DNSRHNHDKT KEKKKGKEYR KMKDSKGTGG
960 970 980 990 1000
SEQHVLHHVT TEQDSSPVAS DGEHPDSEPV VSVNDDNSKH QEEELRRKIE
1010 1020 1030 1040 1050
LEAEERKLEE TLEYQRRIEN EAKQKHLAEQ RKKTTGIIPE KVVTGFSGGY
1060 1070 1080 1090 1100
LNPSADEHDA HEQLEHFKQK SQFPNSFDGM PRDVMDGTTV LIDSITSSAN
1110 1120 1130 1140 1150
QRLRSTPSQY HAKVEQGLPN GGSPVDGVLL SERRIGRKTK RQKNSTKLID
1160 1170 1180 1190 1200
GKYQAVSSGK ENVEVGISHI EDRVKEQIKI HGSGVNLHLG DNGTKTLRQL
1210 1220 1230 1240 1250
QAEEDDEERF QADLKQAVRQ SLDAYQAHQK LPLVSSLRMP QRMSHEVDDV
1260 1270 1280 1290 1300
GLSPDDVVIK NMSGADMLGT GLKNEVGEYN CFLNVIIQSL WHLRRFRNEF
1310 1320 1330 1340 1350
LGRSTSEHVH VGDPCVVCAL YEIFTALSVA STDTRREAVA PSALRIALSN
1360 1370 1380 1390 1400
LYPDSNFFQE AQMNDASEVL GVIFDCLHRS FTSSSSISDT ESVESNCMGS
1410 1420 1430 1440 1450
WDCANSICLA HSLFGMDIFE RMNCYNCSLE SRHLKYTSFF HNINASALRT
1460 1470 1480 1490 1500
MKVMCAESSF DELLNLVEMN HQLACDPEAG GCGKFNYIHH ILSTPPHVFT
1510 1520 1530 1540 1550
IVLGWQNTCE SADDITATLA ALNTEIDVSV LYRGLDPKNR YCLVSVVCYY
1560 1570 1580 1590 1600
GQHYHCFAYS HEHERWVMYD DKTVKVIGSW DNVLTMCERG HLQPQVLFFE

AVN
Length:1,603
Mass (Da):180,493
Last modified:July 27, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6B8411A2D31EE044
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
FN594950 Genomic DNA Translation: CCB43125.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
VIT_17s0000g05500.t01; VIT_17s0000g05500.t01; VIT_17s0000g05500

Gramene; a comparative resource for plants

More...
Gramenei
VIT_17s0000g05500.t01; VIT_17s0000g05500.t01; VIT_17s0000g05500

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN594950 Genomic DNA Translation: CCB43125.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiF6GTB6

Genome annotation databases

EnsemblPlantsiVIT_17s0000g05500.t01; VIT_17s0000g05500.t01; VIT_17s0000g05500
GrameneiVIT_17s0000g05500.t01; VIT_17s0000g05500.t01; VIT_17s0000g05500

Phylogenomic databases

eggNOGiKOG1887, Eukaryota
HOGENOMiCLU_001131_1_0_1
InParanoidiF6GTB6
OMAiEIDDAWA

Family and domain databases

Gene3Di1.25.40.10, 1 hit
InterProiView protein in InterPro
IPR006866, DUF627_N
IPR006865, DUF629
IPR038765, Papain-like_cys_pep_sf
IPR001394, Peptidase_C19_UCH
IPR011990, TPR-like_helical_dom_sf
IPR028889, USP_dom
IPR013087, Znf_C2H2_type
PfamiView protein in Pfam
PF04781, DUF627, 1 hit
PF04780, DUF629, 1 hit
PF00443, UCH, 1 hit
SUPFAMiSSF54001, SSF54001, 1 hit
PROSITEiView protein in PROSITE
PS50235, USP_3, 1 hit
PS00028, ZINC_FINGER_C2H2_1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF6GTB6_VITVI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F6GTB6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 27, 2011
Last sequence update: July 27, 2011
Last modified: September 29, 2021
This is version 52 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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