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Entry version 65 (07 Oct 2020)
Sequence version 1 (28 Jun 2011)
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Protein

Protein RRC1-like

Gene

At5g10800

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable SR-like splicing factor.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-binding
Biological processmRNA processing, mRNA splicing

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein RRC1-likeCurated
Alternative name(s):
Reduced red-light responses in CRY1CRY2 background 1-like proteinCurated
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g10800Imported
ORF Names:T30N20.70Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G10800

The Arabidopsis Information Resource

More...
TAIRi
locus:2183775, AT5G10800

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

No photomorphogenic phenotype.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004360391 – 947Protein RRC1-likeAdd BLAST947

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4KIA8

PRoteomics IDEntifications database

More...
PRIDEi
F4KIA8

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
236178

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in leaves, inflorescence stems, roots, flower buds, open flowers and siliques.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4KIA8, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
F4KIA8, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT5G10800.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
F4KIA8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini187 – 268RRMPROSITE-ProRule annotationAdd BLAST82
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati336 – 379SURP motifPROSITE-ProRule annotationAdd BLAST44
Domaini444 – 589CIDPROSITE-ProRule annotationAdd BLAST146
Domaini638 – 672SAPPROSITE-ProRule annotationAdd BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi22 – 25Poly-LysSequence analysis4
Compositional biasi858 – 947Arg-richPROSITE-ProRule annotationAdd BLAST90
Compositional biasi895 – 940Asp-richPROSITE-ProRule annotationAdd BLAST46

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0151, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_010743_2_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4KIA8

KEGG Orthology (KO)

More...
KOi
K12842

Database of Orthologous Groups

More...
OrthoDBi
523911at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd12223, RRM_SR140, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.790, 1 hit
1.25.40.90, 1 hit
3.30.70.330, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006569, CID_dom
IPR008942, ENTH_VHS
IPR013170, mRNA_splic_Cwf21_dom
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR035009, SR140_RRM
IPR000061, Surp
IPR035967, SWAP/Surp_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04818, CID, 1 hit
PF08312, cwf21, 1 hit
PF00076, RRM_1, 1 hit
PF01805, Surp, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01115, cwf21, 1 hit
SM00582, RPR, 1 hit
SM00360, RRM, 1 hit
SM00648, SWAP, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF109905, SSF109905, 1 hit
SSF48464, SSF48464, 1 hit
SSF54928, SSF54928, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51391, CID, 1 hit
PS50102, RRM, 1 hit
PS50128, SURP, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

F4KIA8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVKDEFFLDH PGRKHRSRNT EKKKKPRRRE RRMKQLVCIK SPWNRFKGIM
60 70 80 90 100
LQLRLLLEVT INPNDNKLKP DSQGEKSRDG DSISKKGSRY VPSFLPPPLA
110 120 130 140 150
SKGKGPENKR DEERSKEMEK GKTRNIDHFV EELKREQEIR ERRNQDRENS
160 170 180 190 200
RDHNSDNTSS SRFDELPDYF DPSGRLGSLD DGDPQTTNLY VVNLSSKVDE
210 220 230 240 250
NFLLRTFGRF GPIASVKIMW PRTEEEKRRE RHCGFVAFMN RADGEAAKEK
260 270 280 290 300
MQGIIVYEYE LKIGWGKVVF LPSQALPAPP PGHMAIRSKE GCNLIFSVTS
310 320 330 340 350
GPPMNSVPNQ NSELVLTPNV PDITVISPED EHLKQIIDTM ALNVLDGGCA
360 370 380 390 400
FEQAIMERGR GNPLFNFLFE LGSKEHTYYV WRLYSFAQGD TLQRWRTEPY
410 420 430 440 450
IMIAGSGRWI PPPLPATRSP EHGKESRGTY AAGKSRCTEA EQTLTDSQRD
460 470 480 490 500
EFEDMLRALT LERSQIREAM GFALDNAEAA GEVVEVLTES LTLKETSIPT
510 520 530 540 550
KVARLMLVSD IIHNSSARVK NASAYRTKFE ATLPDIMESF NDLYHSVHGR
560 570 580 590 600
ITAEALRERV LKVLQVWADW FLFSDAYING LRATFLRSRN FGVTSFHSIC
610 620 630 640 650
GDAPDIEKKG LIGNMNDADK INQDAALAMG EGAARQELMN RPISELERRC
660 670 680 690 700
RHNGLSLLGG REMMVARLVC LKDAEKQRGY EVVDENAKYR QGHSTWEEVN
710 720 730 740 750
IEPKRMKTSY DKVETEEPVD LASTIPIPQP ELKAFVKKEK IDLILPTSRW
760 770 780 790 800
AREDDETDDE QKKSYSSGSD NAGGITFKTD EEDLKADPSV RVQPENEIDV
810 820 830 840 850
EQRQKLRHIE IALIEYRESL EEQGMKNSEE IERKVAIHRK RLEADGLSGN
860 870 880 890 900
QRVLPEKREK REDSRDSSRK RNRSESQNRS QSPPQKSLTR ERVRDHDLDK
910 920 930 940
DRHRDRDRQQ HDLDKDRKRR AKSSSRERDD HDRSRERDRD WRRRGMR
Length:947
Mass (Da):109,185
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6E7A83308295F27E
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8BCT5A0A1P8BCT5_ARATH
RNA recognition motif (RRM)-contain...
At5g10800, T30N20.70, T30N20_70
826Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8BCU4A0A1P8BCU4_ARATH
RNA recognition motif (RRM)-contain...
At5g10800, T30N20.70, T30N20_70
755Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB96835 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL365234 Genomic DNA Translation: CAB96835.1 Sequence problems.
CP002688 Genomic DNA Translation: AED91598.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T50789

NCBI Reference Sequences

More...
RefSeqi
NP_196641.2, NM_121118.5

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G10800.1; AT5G10800.1; AT5G10800

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
830947

Gramene; a comparative resource for plants

More...
Gramenei
AT5G10800.1; AT5G10800.1; AT5G10800

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G10800

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL365234 Genomic DNA Translation: CAB96835.1 Sequence problems.
CP002688 Genomic DNA Translation: AED91598.1
PIRiT50789
RefSeqiNP_196641.2, NM_121118.5

3D structure databases

SMRiF4KIA8
ModBaseiSearch...

Protein-protein interaction databases

IntActiF4KIA8, 1 interactor
STRINGi3702.AT5G10800.1

Proteomic databases

PaxDbiF4KIA8
PRIDEiF4KIA8
ProteomicsDBi236178

Genome annotation databases

EnsemblPlantsiAT5G10800.1; AT5G10800.1; AT5G10800
GeneIDi830947
GrameneiAT5G10800.1; AT5G10800.1; AT5G10800
KEGGiath:AT5G10800

Organism-specific databases

AraportiAT5G10800
TAIRilocus:2183775, AT5G10800

Phylogenomic databases

eggNOGiKOG0151, Eukaryota
HOGENOMiCLU_010743_2_0_1
InParanoidiF4KIA8
KOiK12842
OrthoDBi523911at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4KIA8

Gene expression databases

ExpressionAtlasiF4KIA8, baseline and differential

Family and domain databases

CDDicd12223, RRM_SR140, 1 hit
Gene3Di1.10.10.790, 1 hit
1.25.40.90, 1 hit
3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR006569, CID_dom
IPR008942, ENTH_VHS
IPR013170, mRNA_splic_Cwf21_dom
IPR012677, Nucleotide-bd_a/b_plait_sf
IPR035979, RBD_domain_sf
IPR000504, RRM_dom
IPR035009, SR140_RRM
IPR000061, Surp
IPR035967, SWAP/Surp_sf
PfamiView protein in Pfam
PF04818, CID, 1 hit
PF08312, cwf21, 1 hit
PF00076, RRM_1, 1 hit
PF01805, Surp, 1 hit
SMARTiView protein in SMART
SM01115, cwf21, 1 hit
SM00582, RPR, 1 hit
SM00360, RRM, 1 hit
SM00648, SWAP, 1 hit
SUPFAMiSSF109905, SSF109905, 1 hit
SSF48464, SSF48464, 1 hit
SSF54928, SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS51391, CID, 1 hit
PS50102, RRM, 1 hit
PS50128, SURP, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRRC1L_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4KIA8
Secondary accession number(s): Q9LEV9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 13, 2016
Last sequence update: June 28, 2011
Last modified: October 7, 2020
This is version 65 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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