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Entry version 62 (18 Sep 2019)
Sequence version 1 (28 Jun 2011)
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Protein

E3 ubiquitin-protein ligase PRT6

Gene

PRT6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Ubiquitin protein ligase which is a component of the N-end rule pathway with arginine specificity, and functions with the arginyltransferases ATE1 and ATE2. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation (PubMed:17572409, PubMed:19255443, PubMed:19620738, PubMed:22020282). Does not participate in degradation of proteins with N-terminal Phe or Leu (PubMed:17572409). The N-end rule pathway regulates seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination (PubMed:19255443). The N-end rule pathway regulates various aspects of leaf and shoot development (PubMed:19620738). Involved in the ubiquitination and subsequent degradation of RAP2-12, an activator of hypoxic gene expression. The ubiquitination occurs after the N-arginylation of RAP2-12 by ATE1 or ATE2 under aerobic conditions (PubMed:22020282). The end-rule pathway plays a role in regulating the timing and amplitude of the immune response following infection with the bacterial pathogen Pseudomonas syringae pv tomato (PubMed:27173012, PubMed:30117535). Regulates the biosynthesis of plant-defense metabolites such as glucosinolates, and the biosynthesis and response to the phytohormone jasmonate (JA), which plays a key role in plant immunity (PubMed:27173012). Controls the expression of specific defense-response genes, activates the synthesis pathway for the phytoalexin camalexin, and influences basal resistance to the hemibiotroph pathogen Pseudomonas syringae pv tomato (PubMed:30117535). Coordinates the mobilization of seed storage reserves and regulates the abundance and activities of several proteases following seed germination (PubMed:29168982).7 Publications

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine. EC:2.3.2.27

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.Curated
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri119 – 189UBR-typePROSITE-ProRule annotationAdd BLAST71
Zinc fingeri1395 – 1440RING-type; degeneratePROSITE-ProRule annotationAdd BLAST46

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTransferase
Biological processPlant defense, Ubl conjugation pathway
LigandMetal-binding, Zinc

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00143

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
E3 ubiquitin-protein ligase PRT6Curated (EC:2.3.2.27)
Alternative name(s):
Protein GREENING AFTER EXTENDED DARKNESS 11 Publication
Protein PROTEOLYSIS 61 Publication
RING-type E3 ubiquitin transferase PRT6Curated
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PRT61 Publication
Synonyms:CER31 Publication, GED11 Publication
Ordered Locus Names:At5g02310/At5g02300Imported
ORF Names:T1E22.70/T1E22.60Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G02310

The Arabidopsis Information Resource

More...
TAIRi
locus:2180147 AT5G02310

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Reduced seed germination potential and inhibition of seedling establishment by sucrose (PubMed:19255443). Exhibits abnormal shoot and leaf development (PubMed:19620738). Increased tolerance of seedlings to submergence and starvation (PubMed:25667318).3 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004317201 – 2006E3 ubiquitin-protein ligase PRT6Add BLAST2006

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4KCC2

PRoteomics IDEntifications database

More...
PRIDEi
F4KCC2

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4KCC2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4KCC2 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
F4KCC2 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT5G02310.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
F4KCC2

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1627 – 1633Poly-SerSequence analysis7
Compositional biasi1878 – 1923Cys-richPROSITE-ProRule annotationAdd BLAST46

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the UBR1 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri119 – 189UBR-typePROSITE-ProRule annotationAdd BLAST71
Zinc fingeri1395 – 1440RING-type; degeneratePROSITE-ProRule annotationAdd BLAST46

Keywords - Domaini

Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1139 Eukaryota
KOG1140 Eukaryota
ENOG410XRM3 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000029861

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4KCC2

Database of Orthologous Groups

More...
OrthoDBi
81415at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.2670, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR042065 E3_ELL-like
IPR039164 UBR1-like
IPR036390 WH_DNA-bd_sf
IPR003126 Znf_UBR

The PANTHER Classification System

More...
PANTHERi
PTHR21497 PTHR21497, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02207 zf-UBR, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00396 ZnF_UBR1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46785 SSF46785, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51157 ZF_UBR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

F4KCC2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
METNSSLFGL VSPSSHDLVI ERLASVGVPK KYRSKRGLVE FVRANPAKIS
60 70 80 90 100
ELVSALLPTD DDVKLGLKEA RERPRKSAVS PTMKKRFRES MNMLQWLMFQ
110 120 130 140 150
DEPDVSLRNL AKLNLDQRGV CGSVWGQNDI AYRCRTCEND PTCAICVPCF
160 170 180 190 200
QNGDHNSHDY SIIYTGGGCC DCGDETAWKP DGFCSNHKGS EQIRPLSENL
210 220 230 240 250
ANSVGPILDA LFTCWNNKLL SAESSGQKGA RSNDTLVILQ KMSNELTFIV
260 270 280 290 300
VEMLLEFSMS SESLLSFVSR RIISSSGLLS ILLKAERFLD QDVMKKLHDL
310 320 330 340 350
FLKLIGDPVF KCEFAKAFVS YYPVVISEVV KQGTDNAFKK YPLLSTFSVQ
360 370 380 390 400
ILTVPTLTPF LVKEMNLLAM LLGCLSDIFV SCSGEDGLLQ ATKLERLCET
410 420 430 440 450
SERVIGDLKF VMSHAIVSKY ATHEHRELSR SWLTLLTFAQ GMNPLKRETG
460 470 480 490 500
IPIDEENDYM HLFFVLGHSI AVIHSLLVNG TYSAASDEEI ENDRNAKEEF
510 520 530 540 550
DKCDGDGERY AKVGRLSHED SVCTAIVSSS SFDSSMASEV HKIDPFHALL
560 570 580 590 600
PSSAIYLIRE CLKVLETCLG NDEGISKFLC KLSSSSGRNI PESKMSWPRR
610 620 630 640 650
DLLNVETGGS VSSNLASSSR DPSTGLSPLC GDIQTNLSLD NVCGPYGVVQ
660 670 680 690 700
TDVTADSKRV SCNSADLTKN ASGLRILGLC DWPDIHYDVS SQAISVHLPL
710 720 730 740 750
HRLLSLLIQK ALRICYGESA SYNGVSISHE IPHADFFSSV IGDFHPCGFS
760 770 780 790 800
ALVMEHVLQI RVFCAQVIAG MWKKNGDSAL VSCEWYRSVR WSEQGLELDL
810 820 830 840 850
FLLQCCAALA PADSYVDKLL SRFGLSSYLS LNPDITNEYE PVLVQEMLGL
860 870 880 890 900
LIQILQERRF CGLSTAESLR REIIFKLATG DFTHSQLVKS LPRDLSKSDE
910 920 930 940 950
LQEVLDDVSV YCNPSGMNQG KYSLQSSCWK ELDLYHPRWQ SRDLQSAEER
960 970 980 990 1000
FSRYCGVSAL TTQLPRWRMI YPPLKGLARI GTCKATFQII SSALYYALQS
1010 1020 1030 1040 1050
GTSVKSRAPD GVLITALQLL SLSLDICTQQ RQSNSQDCCL ENSIPILELA
1060 1070 1080 1090 1100
GLEIIGIAQG TEKESLLSLL VSLMKTRMGD GRHQFPEPGS CNISSWIGNL
1110 1120 1130 1140 1150
LKKFSAIDSV CMNLLQSLAP EVVGQSGFDK VMSGSTSDEK RKAKAKERQA
1160 1170 1180 1190 1200
AIMAKMKAEQ SKFLSTLSSS MDDDDPRSEF ETSDSVMEHD SEIAVREVCS
1210 1220 1230 1240 1250
LCHDPDSKDP VSFLIFLQKS KLLSFVDRGP PSWDQCPQSE KKISVDGAPD
1260 1270 1280 1290 1300
LLRMNASSDS LRISSPLMLQ LSDDTISESA NMIESIKARL IGNGQTEKRS
1310 1320 1330 1340 1350
SDGRGKDESN MESLEIAMYQ TVRNKIENMI NQSLTRVDHQ PHEAENCSEK
1360 1370 1380 1390 1400
NSVGGPSTLQ GRFPDIRSRQ TSRRPDAGSD GFHPIDCDGV YLSSCGHAVH
1410 1420 1430 1440 1450
QSCLERYLKS LKERSGRRTV FEGAHIVDLK KKEFLCPVCR RLANSVLPEC
1460 1470 1480 1490 1500
PGDLCSVSKL QDSPRTKLRR KDALQPSLWL SEALCLLRSA AEVIEDGDRG
1510 1520 1530 1540 1550
KTVTPQGDGP RRKDLKSVSK MLWDFYFPKP EDKTLKRLWL PPQSIVMWDT
1560 1570 1580 1590 1600
LKYSLISMEI GTRFAKNSML PVYCIDSLYE ELKTSKGTIL SVLLRVVQSS
1610 1620 1630 1640 1650
RTKNTIHVRQ RFVGMKHLAE SICYGVSSSS SSSIFGSEGT TGSLKNIDLL
1660 1670 1680 1690 1700
WNRASDPVLA HDPFSSLMWA LFCLPFPFLT CEESLLSLVH IFHSVSLVQT
1710 1720 1730 1740 1750
VIAYCACRPS ELSELNFGEN LLNDISNALR ESGGWEYFRS NNMDLSCDIK
1760 1770 1780 1790 1800
DTIRKYSLPF LRRCALLWKL LKSTPRKLHE ESDMFDLPSD PTTDNMDFIY
1810 1820 1830 1840 1850
SPQSELNHVQ ELEKMFNIPP IDIILNDELL RSSTQIWLQH FQREYRVNRV
1860 1870 1880 1890 1900
KRSLCITPVV PFQLMKLPNL YQDLLQRCIK KRCVNCTKVI EEPVLCLLCG
1910 1920 1930 1940 1950
SLCSPIWSPC CRESGCPNHA ITCGAGTGVF LLIRRTTILL QRFARQSPWP
1960 1970 1980 1990 2000
SPYLDTFGEE DIDMIRGKRL YLNEERYAAL TYLVGSHGLD RSSKVLGQTT

IGAVLH
Length:2,006
Mass (Da):223,964
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i77B373F169C77DCC
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8BFH3A0A1P8BFH3_ARATH
E3 ubiquitin-protein ligase
PRT6 proteolysis 6, At5g02300, At5g02310, T1E22.70, T1E22_70
1,924Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAB85535 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes At5g02300 and At5g02310.Curated
The sequence CAB85536 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes At5g02300 and At5g02310.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1341P → H in CAA65198 (PubMed:8811860).Curated1
Sequence conflicti1430Missing in CAA65198 (PubMed:8811860).Curated1
Sequence conflicti1838L → F in CAA65198 (PubMed:8811860).Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL162874 Genomic DNA Translation: CAB85535.1 Sequence problems.
AL162874 Genomic DNA Translation: CAB85536.1 Sequence problems.
CP002688 Genomic DNA Translation: AED90457.1
CP002688 Genomic DNA Translation: ANM70335.1
X95962 Genomic DNA Translation: CAA65198.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T48251
T48252

NCBI Reference Sequences

More...
RefSeqi
NP_001318457.1, NM_001342651.1
NP_195851.2, NM_120309.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G02310.1; AT5G02310.1; AT5G02310
AT5G02310.3; AT5G02310.3; AT5G02310

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
830916

Gramene; a comparative resource for plants

More...
Gramenei
AT5G02310.1; AT5G02310.1; AT5G02310
AT5G02310.3; AT5G02310.3; AT5G02310

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G02310

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162874 Genomic DNA Translation: CAB85535.1 Sequence problems.
AL162874 Genomic DNA Translation: CAB85536.1 Sequence problems.
CP002688 Genomic DNA Translation: AED90457.1
CP002688 Genomic DNA Translation: ANM70335.1
X95962 Genomic DNA Translation: CAA65198.1
PIRiT48251
T48252
RefSeqiNP_001318457.1, NM_001342651.1
NP_195851.2, NM_120309.2

3D structure databases

SMRiF4KCC2
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G02310.1

PTM databases

iPTMnetiF4KCC2

Proteomic databases

PaxDbiF4KCC2
PRIDEiF4KCC2

Genome annotation databases

EnsemblPlantsiAT5G02310.1; AT5G02310.1; AT5G02310
AT5G02310.3; AT5G02310.3; AT5G02310
GeneIDi830916
GrameneiAT5G02310.1; AT5G02310.1; AT5G02310
AT5G02310.3; AT5G02310.3; AT5G02310
KEGGiath:AT5G02310

Organism-specific databases

AraportiAT5G02310
TAIRilocus:2180147 AT5G02310

Phylogenomic databases

eggNOGiKOG1139 Eukaryota
KOG1140 Eukaryota
ENOG410XRM3 LUCA
HOGENOMiHOG000029861
InParanoidiF4KCC2
OrthoDBi81415at2759

Enzyme and pathway databases

UniPathwayiUPA00143

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4KCC2

Gene expression databases

ExpressionAtlasiF4KCC2 baseline and differential
GenevisibleiF4KCC2 AT

Family and domain databases

Gene3Di1.10.10.2670, 1 hit
InterProiView protein in InterPro
IPR042065 E3_ELL-like
IPR039164 UBR1-like
IPR036390 WH_DNA-bd_sf
IPR003126 Znf_UBR
PANTHERiPTHR21497 PTHR21497, 1 hit
PfamiView protein in Pfam
PF02207 zf-UBR, 1 hit
SMARTiView protein in SMART
SM00396 ZnF_UBR1, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51157 ZF_UBR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPRT6_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4KCC2
Secondary accession number(s): Q96248, Q9LZ94, Q9LZ95
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 4, 2015
Last sequence update: June 28, 2011
Last modified: September 18, 2019
This is version 62 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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