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Entry version 58 (18 Sep 2019)
Sequence version 1 (28 Jun 2011)
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Protein

Sm-like protein LSM4

Gene

LSM4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Component of LSM protein complexes, which are involved in RNA processing. Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation by promoting decapping and leading to accurate 5'-3' mRNA decay. The cytoplasmic LSM1-LSM7 complex regulates developmental gene expression by the decapping of specific development-related transcripts. Component of the nuclear LSM2-LSM8 complex which is involved splicing nuclear mRNAs. LSM2-LSM8 binds directly to the U6 small nuclear RNAs (snRNAs) and is essential for accurate splicing of selected development-related mRNAs through the stabilization of the spliceosomal U6 snRNA. Plays a critical role in the regulation of development-related gene expression.2 Publications

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Sm-like protein LSM4Curated
Short name:
AtLSM41 Publication
Alternative name(s):
Protein EMBRYO DEFECTIVE 1644Curated
U6 snRNA-associated Sm-like protein LSM4Curated
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LSM41 Publication
Synonyms:EMB1644Curated
Ordered Locus Names:At5g27720Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G27720

The Arabidopsis Information Resource

More...
TAIRi
locus:2180295 AT5G27720

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus, Spliceosome

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Severe developmental retardation leading to plant death.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004316461 – 129Sm-like protein LSM4Add BLAST129

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

Methylated by PMRT15/SKB1 in response to salt stress or abscisic acid (ABA) treatment.1 Publication

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4K4E3

PRoteomics IDEntifications database

More...
PRIDEi
F4K4E3

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4K4E3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in roots, leaves, stems, flowers and siliques.2 Publications

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4K4E3 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
F4K4E3 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the heptameric LSM1-LSM7 complex that forms a seven-membered ring structure with a donut shape. The LSM subunits are arranged in the order LSM1, LSM2, LSM3, LSM6, LSM5, LSM7 and LSM4 (PubMed:23221597, PubMed:23620288). LSM4 subunit interacts only with its two neighboring subunits, LSM1A or LSM1B and LSM7 (PubMed:23221597).

Component of the heptameric LSM2-LSM8 complex that forms a seven-membered ring structure with a donut shape. The LSM subunits are arranged in the order LSM8, LSM2, LSM3, LSM6, LSM5, LSM7 and LSM4 (PubMed:23221597, PubMed:23620288). LSM4 subunit interacts only with its two neighboring subunits, LSM8 and LSM7 (PubMed:23221597).

2 Publications

Protein-protein interaction databases

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-1308 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1
CPX-1309 LSM2-8 complex, variant LSM3A-LSM6A
CPX-1345 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1
CPX-1346 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1
CPX-1347 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1
CPX-1348 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1
CPX-1349 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1
CPX-1350 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1
CPX-1351 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1
CPX-1352 LSM2-8 complex, variant LSM3A-LSM6B
CPX-1353 LSM2-8 complex, variant LSM3B-LSM6A
CPX-1354 LSM2-8 complex, variant LSM3B-LSM6B
CPX-1391 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H1
CPX-1392 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H1
CPX-1393 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H1
CPX-1394 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H1
CPX-1395 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H1
CPX-1396 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H1
CPX-1397 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H1
CPX-1398 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H1
CPX-1399 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H2
CPX-1400 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H2
CPX-1401 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H2
CPX-1402 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H2
CPX-1403 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H2
CPX-1404 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H2
CPX-1405 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H2
CPX-1406 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H2

STRING: functional protein association networks

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STRINGi
3702.AT5G27720.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
F4K4E3

Database of comparative protein structure models

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ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi92 – 129Gly-richPROSITE-ProRule annotationAdd BLAST38

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the snRNP Sm proteins family.Curated

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3293 Eukaryota
ENOG4111TZU LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000182713

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
F4K4E3

KEGG Orthology (KO)

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KOi
K12623

Identification of Orthologs from Complete Genome Data

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OMAi
DAWMNIH

Database of Orthologous Groups

More...
OrthoDBi
1561576at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd01723 LSm4, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR034101 Lsm4
IPR027141 LSm4/Sm_D1/D3
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf

The PANTHER Classification System

More...
PANTHERi
PTHR23338 PTHR23338, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01423 LSM, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00651 Sm, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50182 SSF50182, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F4K4E3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLPLSLLKTA QGHPMLVELK NGETYNGHLV NCDTWMNIHL REVICTSKDG
60 70 80 90 100
DRFWRMPECY IRGNTIKYLR VPDEVIDKVQ EEKTRTDRKP PGVGRGRGRG
110 120
VDDGGARGRG RGTSMGKMGG NRGAGRGRG
Length:129
Mass (Da):14,323
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2B6658972F9B1DE9
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti7L → F in AAM13039 (PubMed:14593172).Curated1
Sequence conflicti7L → F in AAM91342 (PubMed:14593172).Curated1
Sequence conflicti101V → L in AAM65462 (Ref. 4) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC069556 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED93718.1
AY093040 mRNA Translation: AAM13039.1
AY128942 mRNA Translation: AAM91342.1
AY087911 mRNA Translation: AAM65462.1

NCBI Reference Sequences

More...
RefSeqi
NP_198124.1, NM_122654.4

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G27720.1; AT5G27720.1; AT5G27720

Database of genes from NCBI RefSeq genomes

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GeneIDi
832834

Gramene; a comparative resource for plants

More...
Gramenei
AT5G27720.1; AT5G27720.1; AT5G27720

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G27720

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC069556 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED93718.1
AY093040 mRNA Translation: AAM13039.1
AY128942 mRNA Translation: AAM91342.1
AY087911 mRNA Translation: AAM65462.1
RefSeqiNP_198124.1, NM_122654.4

3D structure databases

SMRiF4K4E3
ModBaseiSearch...

Protein-protein interaction databases

ComplexPortaliCPX-1308 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1
CPX-1309 LSM2-8 complex, variant LSM3A-LSM6A
CPX-1345 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1
CPX-1346 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1
CPX-1347 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1
CPX-1348 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1
CPX-1349 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1
CPX-1350 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1
CPX-1351 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1
CPX-1352 LSM2-8 complex, variant LSM3A-LSM6B
CPX-1353 LSM2-8 complex, variant LSM3B-LSM6A
CPX-1354 LSM2-8 complex, variant LSM3B-LSM6B
CPX-1391 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H1
CPX-1392 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H1
CPX-1393 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H1
CPX-1394 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H1
CPX-1395 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H1
CPX-1396 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H1
CPX-1397 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H1
CPX-1398 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H1
CPX-1399 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6A-PAT1H2
CPX-1400 LSM1-7-PAT1 complex, variant LSM1A-LSM3A-LSM6B-PAT1H2
CPX-1401 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6A-PAT1H2
CPX-1402 LSM1-7-PAT1 complex, variant LSM1A-LSM3B-LSM6B-PAT1H2
CPX-1403 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6A-PAT1H2
CPX-1404 LSM1-7-PAT1 complex, variant LSM1B-LSM3A-LSM6B-PAT1H2
CPX-1405 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6A-PAT1H2
CPX-1406 LSM1-7-PAT1 complex, variant LSM1B-LSM3B-LSM6B-PAT1H2
STRINGi3702.AT5G27720.1

PTM databases

iPTMnetiF4K4E3

Proteomic databases

PaxDbiF4K4E3
PRIDEiF4K4E3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G27720.1; AT5G27720.1; AT5G27720
GeneIDi832834
GrameneiAT5G27720.1; AT5G27720.1; AT5G27720
KEGGiath:AT5G27720

Organism-specific databases

AraportiAT5G27720
TAIRilocus:2180295 AT5G27720

Phylogenomic databases

eggNOGiKOG3293 Eukaryota
ENOG4111TZU LUCA
HOGENOMiHOG000182713
InParanoidiF4K4E3
KOiK12623
OMAiDAWMNIH
OrthoDBi1561576at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4K4E3

Gene expression databases

ExpressionAtlasiF4K4E3 baseline and differential
GenevisibleiF4K4E3 AT

Family and domain databases

CDDicd01723 LSm4, 1 hit
InterProiView protein in InterPro
IPR034101 Lsm4
IPR027141 LSm4/Sm_D1/D3
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
PANTHERiPTHR23338 PTHR23338, 1 hit
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLSM4_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4K4E3
Secondary accession number(s): Q8LAC6, Q8RWJ9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 7, 2015
Last sequence update: June 28, 2011
Last modified: September 18, 2019
This is version 58 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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