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Entry version 75 (17 Jun 2020)
Sequence version 1 (28 Jun 2011)
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Protein

DDT domain-containing protein PTM

Gene

PTM

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Membrane-bound transcription factor required for the plastid-to-nucleus retrograde signaling. Functions in multiple retrograde pathways. The plastid-to-nucleus signal plays an important role in the coordinated expression of both nuclear- and chloroplast-localized genes that encode photosynthesis-related proteins. In the nucleus, activates ABI4 transcription in a PHD-dependent manner associated with histone modifications. Localized primarily in the chloroplast outer membrane as dormant form and, in response to retrograde signals, is released from the membrane through proteolytic cleavage and its cleaved fragment containing the transcription factor domain is redistributed to the nucleus, where it regulates the expression of particular nuclear genes.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri411 – 458PHD-type 1PROSITE-ProRule annotationAdd BLAST48

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DDT domain-containing protein PTMCurated
Alternative name(s):
DDT domain-containing protein 1Curated
Membrane-bound transcription factor PTMCurated
PHD type transcription factor with transmembrane domains1 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PTM1 Publication
Synonyms:DDP11 Publication
Ordered Locus Names:At5g35210Imported
ORF Names:K3D20.8Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G35210

The Arabidopsis Information Resource

More...
TAIRi
locus:2182437 AT5G35210

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1539 – 1559HelicalSequence analysisAdd BLAST21
Transmembranei1569 – 1589HelicalSequence analysisAdd BLAST21
Transmembranei1596 – 1616HelicalSequence analysisAdd BLAST21
Transmembranei1624 – 1644HelicalSequence analysisAdd BLAST21
Transmembranei1682 – 1702HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Chloroplast, Membrane, Nucleus, Plastid, Plastid outer membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

No visible phenotype under normal growth conditions.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004351211 – 1706DDT domain-containing protein PTMAdd BLAST1706

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4JYC8

PRoteomics IDEntifications database

More...
PRIDEi
F4JYC8

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
226434

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4JYC8

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4JYC8 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts (via the DDT domain) with CHR11 (via C-terminus).

1 Publication

GO - Molecular functioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT5G35210.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
F4JYC8

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini192 – 252DDTPROSITE-ProRule annotationAdd BLAST61

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi9 – 18Nuclear localization signalSequence analysis10

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri411 – 458PHD-type 1PROSITE-ProRule annotationAdd BLAST48

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0750 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4JYC8

Identification of Orthologs from Complete Genome Data

More...
OMAi
SFRPQAY

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR018501 DDT_dom
IPR028942 WHIM1_dom
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR019787 Znf_PHD-finger
IPR013083 Znf_RING/FYVE/PHD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02791 DDT, 1 hit
PF00628 PHD, 1 hit
PF15612 WHIM1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00571 DDT, 1 hit
SM00249 PHD, 4 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57903 SSF57903, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50827 DDT, 1 hit
PS01359 ZF_PHD_1, 1 hit
PS50016 ZF_PHD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 1 potential isoform that is computationally mapped.Show allAlign All

Isoform 1 (identifier: F4JYC8-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEAKVPRPRG RPRKRQRLED DNRKLNNRGK KQVLEVEPAV PISLLGCYML
60 70 80 90 100
KDFDDNEVFL GKIVSYDTGL YRVIYEDGDC EELESGDLRR LIISDSYLDD
110 120 130 140 150
ELRVRRKKLD KLILKKEEKK KRNSPENKAV ELPNQVNGVQ ARAVTNSEDG
160 170 180 190 200
DSYSDSESSE SGDKRGSDLE IEAPLVPPVD LPPSSGTIGI PEEAVAHLLS
210 220 230 240 250
VYGFLRSFSF QLYICPFELN DFVGALYFSG PNSLLDAVHV ALLRALKGHL
260 270 280 290 300
ERLSSSKSVL ASKCLRCIDW SLLDVLTWPV YLVQYFTAMG HASGPQWNIF
310 320 330 340 350
NKFVVEIEYY SLPIGMKLKI LQILCDDIFD VADLRDEIDA REESEIGFDP
360 370 380 390 400
DRVATGLLEN VPRRVHPRFA KTSAYKEKEV TDSSTNESKD LDSRCTNGGS
410 420 430 440 450
NEVSSDLDGN SDECRICGMD GTLLCCDGCP LAYHSRCIGV VKMYIPDGPW
460 470 480 490 500
FCPECTINKK GPKIAHGTSL RGAVQFGMDP HGRLFLGTCN HLLVLNISVN
510 520 530 540 550
GDAVVKYYNV NDISKVVLVL ISASSHTLEY VEICKAITQY WDLPEGISLR
560 570 580 590 600
EGEIGLTQAK DREDGKVSEI TKSDSANISN RSHTQTVFDL PTSTLGNTNS
610 620 630 640 650
AVTGGSCGIQ GKKLAARVTY LGLSFKPNTY NNHYTNGELA VSAAASLAVL
660 670 680 690 700
SSEETHEPDL RKYNSAKKAA SSNILEQMKA FSLVAPRFFW PSPDKKEITR
710 720 730 740 750
ERCGWCHSCR LTSASRRGCM LNAAVAGATK GAMKIFSGLF PLKNGEGVLS
760 770 780 790 800
SIAAYILYLE ESLRGLIAGP FLSESPRKQW RKQVEEASTC KALKAPLLEL
810 820 830 840 850
EENICSIALS CDWFKQMDDW LIEHSIFQSA PVTLGVPQRR GPGRTKQNTQ
860 870 880 890 900
AEVTAEGSDA DSFTWWRGGK LSKVILLKAV LSQPATKKAA WQGGSKKIPG
910 920 930 940 950
LNYGDASYIP RRSRRSFWKA AVESSKNISQ LALQVRYLDM SLRWRELVRP
960 970 980 990 1000
DQNLQNVKGP ETDVAIFRNA RICDKKLSDN KVSYGVFFGN QKHLPSRVMK
1010 1020 1030 1040 1050
NIMEVEKTQD RNEKYWLQEA HVPLYLIKEF EESLHRVQMP SSTKKPSKKL
1060 1070 1080 1090 1100
SKLQRKQLKA SLMDIFSYIA SRRDKMEKCS CASCDHDVLL RDTTTCSSCH
1110 1120 1130 1140 1150
GFCHKDCTSM SQHTNGNVEV LVTCKRCYLS KTRVPTNINH RQSTAPQFTI
1160 1170 1180 1190 1200
NVRHQNAVIP VIKVKPPSQQ LSSQKPRENT SGVKQVTPDS SVSKSKQKTL
1210 1220 1230 1240 1250
SCGVIWRKKN VEDTGVDFRN QNILLAGRSD KPSLEPVCGI CLLPYNPGLT
1260 1270 1280 1290 1300
YIHCTKCEKW FHTEAVKLKD SQIPEVVGFK CCKCRRIRSP DCPYMDPKLK
1310 1320 1330 1340 1350
EQKQIKRIVF TNQKQRQGNS GLDSDSERMS EQKDSKPSTP LPATPLYPPD
1360 1370 1380 1390 1400
DVFIPEDDPL LVSVSKVKQI TPSSFDLEWS TTAFAPGPQK LPVRRQVKRE
1410 1420 1430 1440 1450
DSDAAYPELH PIVKPEAEEQ ALPVLTEWDL SGELLFDYED MEFEPQTYFS
1460 1470 1480 1490 1500
LTELLTADDS GGGQYQENGD MVVSGNPQFE PTEKEECEDD MGPCQRCLQM
1510 1520 1530 1540 1550
DPAPDLLCTV CGLLIHSHCS PWSALPGSSW SCGQCRIRAL GSITLGSFGA
1560 1570 1580 1590 1600
ITQFKSILPD RSTKVDISLA GPFAGAALSV SMFAVGLFLS TEPDAANDLV
1610 1620 1630 1640 1650
QVPSMLFQGS LLLGLISRAT LGYAALHAAT VSIHPLVIAG WCGLTTTAFN
1660 1670 1680 1690 1700
MLPVGCLDGG RAVQGAFGKN ALVTFGLSTY VMLGLRVLGG PLALPWGLYV

LICRNT
Length:1,706
Mass (Da):189,210
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8EA504D21BD5263F
GO
Isoform 2 (identifier: F4JYC8-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1537-1539: IRA → EWQ
     1540-1706: Missing.

Show »
Length:1,539
Mass (Da):172,146
Checksum:iE7FF6CC5CD7D3F06
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2H1ZE73A0A2H1ZE73_ARATH
PHD type transcription factor with ...
PTM At5g35210, T25C13.90, T25C13_90
1,678Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAA98208 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAD93752 differs from that shown. Reason: Erroneous initiation. Truncated N-terminus.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti1334D → G in BAD93752 (Ref. 3) Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0580141537 – 1539IRA → EWQ in isoform 2. 3
Alternative sequenceiVSP_0580151540 – 1706Missing in isoform 2. Add BLAST167

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AP002031 Genomic DNA Translation: BAA98208.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93946.1
AK221734 mRNA Translation: BAD93752.1 Different initiation.

NCBI Reference Sequences

More...
RefSeqi
NP_198371.3, NM_122912.4 [F4JYC8-2]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G35210.1; AT5G35210.1; AT5G35210
AT5G35210.2; AT5G35210.2; AT5G35210 [F4JYC8-2]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
833475

Gramene; a comparative resource for plants

More...
Gramenei
AT5G35210.1; AT5G35210.1; AT5G35210
AT5G35210.2; AT5G35210.2; AT5G35210 [F4JYC8-2]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G35210

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP002031 Genomic DNA Translation: BAA98208.1 Sequence problems.
CP002688 Genomic DNA Translation: AED93946.1
AK221734 mRNA Translation: BAD93752.1 Different initiation.
RefSeqiNP_198371.3, NM_122912.4 [F4JYC8-2]

3D structure databases

SMRiF4JYC8
ModBaseiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G35210.1

PTM databases

iPTMnetiF4JYC8

Proteomic databases

PaxDbiF4JYC8
PRIDEiF4JYC8
ProteomicsDBi226434

Genome annotation databases

EnsemblPlantsiAT5G35210.1; AT5G35210.1; AT5G35210
AT5G35210.2; AT5G35210.2; AT5G35210 [F4JYC8-2]
GeneIDi833475
GrameneiAT5G35210.1; AT5G35210.1; AT5G35210
AT5G35210.2; AT5G35210.2; AT5G35210 [F4JYC8-2]
KEGGiath:AT5G35210

Organism-specific databases

AraportiAT5G35210
TAIRilocus:2182437 AT5G35210

Phylogenomic databases

eggNOGiCOG0750 LUCA
InParanoidiF4JYC8
OMAiSFRPQAY

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4JYC8

Gene expression databases

ExpressionAtlasiF4JYC8 baseline and differential

Family and domain databases

Gene3Di3.30.40.10, 2 hits
InterProiView protein in InterPro
IPR018501 DDT_dom
IPR028942 WHIM1_dom
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR019787 Znf_PHD-finger
IPR013083 Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF02791 DDT, 1 hit
PF00628 PHD, 1 hit
PF15612 WHIM1, 1 hit
SMARTiView protein in SMART
SM00571 DDT, 1 hit
SM00249 PHD, 4 hits
SUPFAMiSSF57903 SSF57903, 3 hits
PROSITEiView protein in PROSITE
PS50827 DDT, 1 hit
PS01359 ZF_PHD_1, 1 hit
PS50016 ZF_PHD_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPTM_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4JYC8
Secondary accession number(s): F4JYC9, Q56XE1, Q9LHR7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 9, 2015
Last sequence update: June 28, 2011
Last modified: June 17, 2020
This is version 75 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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