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UniProtKB - F4JXW9 (F4JXW9_ARATH)

Entry version 63 (13 Feb 2019)
Sequence version 1 (28 Jun 2011)
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Protein
Submitted name:

Catalytics

Gene

At5g11560

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • protein folding in endoplasmic reticulum Source: GO_Central
View the complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
CatalyticsImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At5g11560Imported
ORF Names:F15N18.150Imported, F15N18_150Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...Araporti		AT5G11560

The Arabidopsis Information Resource

More...TAIRi		locus:2144266 AT5G11560

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei949 – 972HelicalSequence analysisAdd BLAST24

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 21Sequence analysisAdd BLAST21
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500330969622 – 982Sequence analysisAdd BLAST961

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		F4JXW9

PRoteomics IDEntifications database

More...PRIDEi		F4JXW9

PTM databases

SwissPalm database of S-palmitoylation events

More...SwissPalmi		F4JXW9

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		3702.AT5G11560.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...ProteinModelPortali		F4JXW9

Database of comparative protein structure models

More...ModBasei		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini764 – 981EMC1_CInterPro annotationAdd BLAST218

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG2103 Eukaryota
ENOG410XPCR LUCA

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		F4JXW9

Identification of Orthologs from Complete Genome Data

More...OMAi		HHWQLYL

Database of Orthologous Groups

More...OrthoDBi		1017611at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.130.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR026895 EMC1
IPR011678 EMC1_C
IPR002372 PQQ_repeat
IPR011047 Quinoprotein_ADH-like_supfam
IPR015943 WD40/YVTN_repeat-like_dom_sf

The PANTHER Classification System

More...PANTHERi		PTHR21573 PTHR21573, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF07774 EMC1_C, 1 hit
PF13360 PQQ_2, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50998 SSF50998, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F4JXW9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAIRVFLTLL LFLSSAILSF SLYEDQAGLT DWHQRYIGKV KHAVFHTQKT 
        60         70         80         90        100
GRKRVIVSTE ENVVASLDLR HGEIFWRHVL GTKDAIDGVG IALGKYVITL 
       110        120        130        140        150
SSEGSTLRAW NLPDGQMVWE TSLHTAQHSK SLLSVPINLK VDKDYPITVF 
       160        170        180        190        200
GGGYLHAVSA IDGEVLWKKD FTAEGFEVQR VLQAPGSSII YVLGFLHSSE 
       210        220        230        240        250
AVVYQIDSKS GEVVAQKSTV FPGGFSGEIS SVSSDKVVVL DSTRSILVTI 
       260        270        280        290        300
GFIDGDISFQ KTPISDLVED SGTAEILSPL LSNMLAVKVN KRTIFVNVGD 
       310        320        330        340        350
KGKLEVVDSL SDETAMSDSL PVADDQEAFA SVHHEGSRIH LMVKLVNDLN 
       360        370        380        390        400
NVLLRETIQM DQNRGRVHKV FMNNYIRTDR SNGFRALIVM EDHSLLLLQQ 
       410        420        430        440        450
GAIVWSREEG LASVTDVTTA ELPLEKDGVS VAKVEHTLFE WLKGHVLKLK 
       460        470        480        490        500
GSLLLASPED VVAIQDLRVK SSGKNKLTRD HNGFRKLILA LTRAGKLFAL 
       510        520        530        540        550
HTGDGRIVWS MLLNSPSQSQ SCERPNGVSL YQWQVPHHHA MDENPSVLVV 
       560        570        580        590        600
GKCGSDSSAP GVLSFVDVYT GKEISSSDIG HSVVQVMPLP ITDSKEQRLH 
       610        620        630        640        650
LIADTVGHVH LYPKTSEALS IFQREFQNVY WYTVEADDGI IRGHVMKGSC 
       660        670        680        690        700
SGETADEYCF TTRELWTVVF PSESEKIIST LTRKPNEVVH TQAKVNTDQD 
       710        720        730        740        750
LLYKYVSRNL LFVATVSPKG AGEIGSVTPE ESSLVVYLID TITGRILHRL 
       760        770        780        790        800
SHQGCQGPVH AVFSENWVVY HYFNLRAHKY EVTVVEIYDQ SRAENKNVWK 
       810        820        830        840        850
LILGKHNLTA PITSYSRPEV FTKSQSYFFA QSVKTIAVTS TAKGITSKQL 
       860        870        880        890        900
LIGTIGDQIL ALDKRFVDPR RTLNPSQAEK EEGIIPLTDT LPIIPQAYVT 
       910        920        930        940        950
HSHKVEGLRG IVTAPSKLES TTHVFAYGVD LFYTRLAPSK TYDSLTDDFS 
       960        970        980 
YALLLITIVA LVAAIYITWV LSEKKELSEK WR
Length:982
Mass (Da):108,868
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i07757A511A25D164
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP002688 Genomic DNA Translation: AED91695.1

NCBI Reference Sequences

More...RefSeqi		NP_196717.3, NM_121194.4

UniGene gene-oriented nucleotide sequence clusters

More...UniGenei		At.5135

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		AT5G11560.1; AT5G11560.1; AT5G11560

Database of genes from NCBI RefSeq genomes

More...GeneIDi		831028

Gramene; a comparative resource for plants

More...Gramenei		AT5G11560.1; AT5G11560.1; AT5G11560

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ath:AT5G11560

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002688 Genomic DNA Translation: AED91695.1
RefSeqiNP_196717.3, NM_121194.4
UniGeneiAt.5135

3D structure databases

ProteinModelPortaliF4JXW9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G11560.1

PTM databases

SwissPalmiF4JXW9

Proteomic databases

PaxDbiF4JXW9
PRIDEiF4JXW9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G11560.1; AT5G11560.1; AT5G11560
GeneIDi831028
GrameneiAT5G11560.1; AT5G11560.1; AT5G11560
KEGGiath:AT5G11560

Organism-specific databases

AraportiAT5G11560
TAIRilocus:2144266 AT5G11560

Phylogenomic databases

eggNOGiKOG2103 Eukaryota
ENOG410XPCR LUCA
InParanoidiF4JXW9
OMAiHHWQLYL
OrthoDBi1017611at2759

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR026895 EMC1
IPR011678 EMC1_C
IPR002372 PQQ_repeat
IPR011047 Quinoprotein_ADH-like_supfam
IPR015943 WD40/YVTN_repeat-like_dom_sf
PANTHERiPTHR21573 PTHR21573, 1 hit
PfamiView protein in Pfam
PF07774 EMC1_C, 1 hit
PF13360 PQQ_2, 1 hit
SUPFAMiSSF50998 SSF50998, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF4JXW9_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4JXW9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: February 13, 2019
This is version 63 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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