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Entry version 49 (11 Dec 2019)
Sequence version 1 (28 Jun 2011)
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Protein
Submitted name:

Hydroxyproline-rich glycoprotein family protein

Gene

CHUP1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Hydroxyproline-rich glycoprotein family proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:CHUP1Imported
Synonyms:AtCHUP1Imported
Ordered Locus Names:At3g25690Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT3G25690

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 18Sequence analysisAdd BLAST18
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500330962419 – 863Sequence analysisAdd BLAST845

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
F4JA42

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4JA42 baseline and differential

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
F4JA42

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni23 – 50DisorderedSequence analysisAdd BLAST28
Regioni257 – 341DisorderedSequence analysisAdd BLAST85
Regioni363 – 395DisorderedSequence analysisAdd BLAST33
Regioni471 – 577DisorderedSequence analysisAdd BLAST107
Regioni595 – 614DisorderedSequence analysisAdd BLAST20
Regioni838 – 863DisorderedSequence analysisAdd BLAST26

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili62 – 89Sequence analysisAdd BLAST28
Coiled coili118 – 199Sequence analysisAdd BLAST82

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi33 – 47PolyampholyteSequence analysisAdd BLAST15
Compositional biasi263 – 299PolarSequence analysisAdd BLAST37
Compositional biasi316 – 341PolarSequence analysisAdd BLAST26
Compositional biasi471 – 491PolarSequence analysisAdd BLAST21
Compositional biasi531 – 567Pro-richSequence analysisAdd BLAST37
Compositional biasi844 – 863PolarSequence analysisAdd BLAST20

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IGMN Eukaryota
ENOG4111F63 LUCA

Identification of Orthologs from Complete Genome Data

More...
OMAi
DPKLSCE

Database of Orthologous Groups

More...
OrthoDBi
1056094at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR040265 CHUP1-like

The PANTHER Classification System

More...
PANTHERi
PTHR31342 PTHR31342, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

F4JA42-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFVRIGFVVA ASIAAVTVKR LNVKPSKPSK PSDNGEGGDK EQSVDPDYNL
60 70 80 90 100
NDKNLQEELS QNGIVRKELE VARNKIKELQ RQIQLDANQT KGQLLLLKQH
110 120 130 140 150
VSSLQMKEEE AMNKDTEVER KLKAVQDLEV QVMELKRKNR ELQHEKRELS
160 170 180 190 200
IKLDSAEARI ATLSNMTESD KVAKVREEVN NLKHNNEDLL KQVEGLQMNR
210 220 230 240 250
FSEVEELVYL RWVNACLRYE LRNYQTPAGK ISARDLSKNL SPKSQAKAKR
260 270 280 290 300
LMLEYAGSER GQGDTDLESN YSQPSSPGSD DFDNASMDSS TSRFSSFSKK
310 320 330 340 350
PGLIQKLKKW GKSKDDSSVQ SSPSRSFYGG SPGRLSSSMN KQRGPLESLM
360 370 380 390 400
IRNAGESVAI TTFGQVDQES PGTPETPNLP RIRTQQQASS PGEGLNSVAA
410 420 430 440 450
SFHVMSKSVD NVLDEKYPAY KDRHKLAVER EKHIKHKADQ ARAERFGGNV
460 470 480 490 500
ALPPKLAQLK EKRVVVPSVI TATGDQSNES NESNEGKASE NAATVTKMKL
510 520 530 540 550
VDIEKRPPRV PRPPPRSAGG GKSTNLPSAR PPLPGGGPPP PPPPPGGGPP
560 570 580 590 600
PPPGGGPPPP PPPPGALGRG AGGGNKVHRA PELVEFYQSL MKRESKKEGA
610 620 630 640 650
PSLISSGTGN SSAARNNMIG EIENRSTFLL AVKADVETQG DFVQSLATEV
660 670 680 690 700
RASSFTDIED LLAFVSWLDE ELSFLVDERA VLKHFDWPEG KADALREAAF
710 720 730 740 750
EYQDLMKLEK QVTSFVDDPN LSCEPALKKM YKLLEKVEQS VYALLRTRDM
760 770 780 790 800
AISRYKEFGI PVDWLSDTGV VGKIKLSSVQ LAKKYMKRVA YELDSVSGSD
810 820 830 840 850
KDPNREFLLL QGVRFAFRVH QFAGGFDAES MKAFEELRSR AKTESGDNNN
860
NNNNNSNEEE SVN
Length:863
Mass (Da):95,216
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE50B96704ADAAE29
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9LI74CHUP1_ARATH
Protein CHUP1, chloroplastic
CHUP1 At3g25690, T5M7.14
1,004Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1I9LT48A0A1I9LT48_ARATH
Hydroxyproline-rich glycoprotein fa...
CHUP1 AtCHUP1, At3g25690
1,006Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP002686 Genomic DNA Translation: AEE77053.1

NCBI Reference Sequences

More...
RefSeqi
NP_001189975.1, NM_001203046.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT3G25690.3; AT3G25690.3; AT3G25690

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
822157

Gramene; a comparative resource for plants

More...
Gramenei
AT3G25690.3; AT3G25690.3; AT3G25690

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002686 Genomic DNA Translation: AEE77053.1
RefSeqiNP_001189975.1, NM_001203046.1

3D structure databases

SMRiF4JA42
ModBaseiSearch...

Proteomic databases

PRIDEiF4JA42

Genome annotation databases

EnsemblPlantsiAT3G25690.3; AT3G25690.3; AT3G25690
GeneIDi822157
GrameneiAT3G25690.3; AT3G25690.3; AT3G25690

Organism-specific databases

AraportiAT3G25690

Phylogenomic databases

eggNOGiENOG410IGMN Eukaryota
ENOG4111F63 LUCA
OMAiDPKLSCE
OrthoDBi1056094at2759

Gene expression databases

ExpressionAtlasiF4JA42 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR040265 CHUP1-like
PANTHERiPTHR31342 PTHR31342, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF4JA42_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4JA42
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 28, 2011
Last sequence update: June 28, 2011
Last modified: December 11, 2019
This is version 49 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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