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Entry version 57 (02 Jun 2021)
Sequence version 2 (25 Jan 2012)
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Protein

Mechanosensitive ion channel protein 8

Gene

MSL8

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Exhibits a 6.3-fold preference for chloride over sodium. Regulates osmotic forces during pollen hydration and germination.

1 Publication

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes regulatory mechanisms for enzymes, transporters or microbial transcription factors, and reports the components which regulate (by activation or inhibition) the reaction.<p><a href='/help/activity_regulation' target='_top'>More...</a></p>Activity regulationi

Not regulated by MgCl2, ruthenium red or tetramethylammonium-Cl.1 Publication

<p>This subsection of the 'Function' section describes biophysical and chemical properties, such as maximal absorption, kinetic parameters, pH dependence, redox potentials and temperature dependence.<p><a href='/help/biophysicochemical_properties' target='_top'>More...</a></p>Kineticsi

Has a unitary conductance of 57 pS under negative membrane potentials and 39 pS under positive membrane potentials, and a gating threshold pressure of -48.2 mm Hg.1 Publication

      <p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

      GO - Biological processi

      <p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

      Molecular functionIon channel
      Biological processIon transport, Transport

      Protein family/group databases

      Transport Classification Database

      More...
      TCDBi
      1.A.23.4.7, the small conductance mechanosensitive ion channel (mscs) family

      <p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
      Recommended name:
      Mechanosensitive ion channel protein 81 Publication
      Alternative name(s):
      Mechanosensitive channel of small conductance-like 81 Publication
      MscS-Like protein 81 Publication
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
      Name:MSL81 Publication
      Ordered Locus Names:At2g17010Imported
      ORF Names:F6P23.17Imported
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
      <p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
      • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

      Organism-specific databases

      Arabidopsis Information Portal

      More...
      Araporti
      AT2G17010

      <p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

      Topology

      Feature keyPosition(s)DescriptionActionsGraphical viewLength
      <p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei298 – 318HelicalSequence analysisAdd BLAST21
      Transmembranei341 – 361HelicalSequence analysisAdd BLAST21
      Transmembranei381 – 401HelicalSequence analysisAdd BLAST21
      Transmembranei411 – 431HelicalSequence analysisAdd BLAST21
      Transmembranei673 – 693HelicalSequence analysisAdd BLAST21
      Transmembranei709 – 729HelicalSequence analysisAdd BLAST21

      Keywords - Cellular componenti

      Cell membrane, Membrane

      <p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

      <p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

      No visible morphological defects in the coat or cell wall of dessicated pollen grains, but strongly decreased viability during rehydration.1 Publication

      <p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

      Molecule processing

      Feature keyPosition(s)DescriptionActionsGraphical viewLength
      <p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004153301 – 908Mechanosensitive ion channel protein 8Add BLAST908

      Proteomic databases

      PaxDb, a database of protein abundance averages across all three domains of life

      More...
      PaxDbi
      F4IME2

      PRoteomics IDEntifications database

      More...
      PRIDEi
      F4IME2

      ProteomicsDB: a multi-organism proteome resource

      More...
      ProteomicsDBi
      239008

      <p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

      <p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

      Expressed in tricellular and mature pollen, and in germinating tube. Not detected in leaves or roots.1 Publication

      Gene expression databases

      ExpressionAtlas, Differential and Baseline Expression

      More...
      ExpressionAtlasi
      F4IME2, baseline and differential

      <p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

      Protein-protein interaction databases

      STRING: functional protein association networks

      More...
      STRINGi
      3702.AT2G17010.1

      <p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

      <p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

      Region

      Feature keyPosition(s)DescriptionActionsGraphical viewLength
      <p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 88DisorderedSequence analysisAdd BLAST88
      Regioni148 – 172DisorderedSequence analysisAdd BLAST25
      Regioni190 – 221DisorderedSequence analysisAdd BLAST32
      Regioni242 – 265DisorderedSequence analysisAdd BLAST24

      Compositional bias

      Feature keyPosition(s)DescriptionActionsGraphical viewLength
      <p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi8 – 22Polar residuesSequence analysisAdd BLAST15
      Compositional biasi28 – 66Basic and acidic residuesSequence analysisAdd BLAST39
      Compositional biasi72 – 86Polar residuesSequence analysisAdd BLAST15
      Compositional biasi154 – 172Polar residuesSequence analysisAdd BLAST19
      Compositional biasi192 – 221Polar residuesSequence analysisAdd BLAST30
      Compositional biasi242 – 257Basic and acidic residuesSequence analysisAdd BLAST16

      <p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

      Keywords - Domaini

      Transmembrane, Transmembrane helix

      Phylogenomic databases

      evolutionary genealogy of genes: Non-supervised Orthologous Groups

      More...
      eggNOGi
      KOG4629, Eukaryota

      InParanoid: Eukaryotic Ortholog Groups

      More...
      InParanoidi
      F4IME2

      Identification of Orthologs from Complete Genome Data

      More...
      OMAi
      AEVIRCT

      Database of Orthologous Groups

      More...
      OrthoDBi
      609350at2759

      Family and domain databases

      Gene3D Structural and Functional Annotation of Protein Families

      More...
      Gene3Di
      2.30.30.60, 1 hit

      Integrated resource of protein families, domains and functional sites

      More...
      InterProi
      View protein in InterPro
      IPR010920, LSM_dom_sf
      IPR016688, MscS-like_plants/fungi
      IPR006685, MscS_channel
      IPR023408, MscS_dom_sf

      Pfam protein domain database

      More...
      Pfami
      View protein in Pfam
      PF00924, MS_channel, 1 hit

      PIRSF; a whole-protein classification database

      More...
      PIRSFi
      PIRSF017209, Memb_At2g17000_prd, 1 hit

      Superfamily database of structural and functional annotation

      More...
      SUPFAMi
      SSF50182, SSF50182, 1 hit

      <p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

      <p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

      This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

      F4IME2-1 [UniParc]FASTAAdd to basket
      « Hide
              10         20         30         40         50
      MDFRNSFKSH SSYKQIRSPG DQSEPSPEHL PILHDHHPDH SGMVVDDQKP
      60 70 80 90 100
      DSTRSSLDDG RNAPVERDAS YKFWQDNTTG TSTDHTAVRT SDKDPIAISR
      110 120 130 140 150
      KGDRLSGSFD FVHGKLPVDE SPTKMVAGEP VNRQWRGRNN EEITLDVDQE
      160 170 180 190 200
      NDDVSHQTMP TPTSTARTSF DASREMRVSF NVRRAGGAFV AGSVPSSSSH
      210 220 230 240 250
      SSSSSSATMR TNQDQPQLQE EEVVRCTSNM SFQRKSELIS RVKTRSRLQD
      260 270 280 290 300
      PPREEETPYS GWRSGQLKSG LLADIDEEDD PLAEEDVPDE YKRGKLDAIT
      310 320 330 340 350
      LLQWLSLVAI IAALACSLSI QSWKKVRVWN LHLWKWEVFL LVLICGRLVS
      360 370 380 390 400
      GWGIRIVVFF IERNFLLRKR VLYFVYGVRR AVQNCLWLGL VLLAWHFLFD
      410 420 430 440 450
      KKVQRETRSR FLPYVTKILV CFLLSTILWL IKTLVVKVLA SSFHVSTYFD
      460 470 480 490 500
      RIQEALFNQY VIETLSGPPM IEMSRIEEEE ERAQDEIFKM QNAGANLPPD
      510 520 530 540 550
      LCAAAFPPGK SGRVMNPKLS PIIPKSTTDN GISMEHLHRM NHKNISAWNM
      560 570 580 590 600
      KRLMKIVRNV SLTTLDEQML ESTYEDESTR QIRSEKEAKA AARKIFKNVE
      610 620 630 640 650
      QRGAKYIYLE DLMRFLREDE AMKTMGLFEG APENKRISKS ALKNWLVNAF
      660 670 680 690 700
      RERRALALTL NDTKTAVNKL HHMINIVTAI VIVVIWLVLL EIASSKVLLF
      710 720 730 740 750
      VSSQVVLLAF IFGNTVKTVF ESIIFLFIVH PYDVGDRCEI DSVQLVVEEM
      760 770 780 790 800
      NILTTVFLRY DNLKIMYPNS LLWQKSINNY YRSPDMGDAI EFCVHITTPL
      810 820 830 840 850
      EKISVIKQRI SNYIDNKPEY WYPQAKIIVK DLEDLHIVRL AIWPCHRINH
      860 870 880 890 900
      QDMAERWTRR AVLVEEVIKI LLELDIQHRF YPLDINVRTM PTVVSSRVPP

      GWSQNQPA
      Length:908
      Mass (Da):104,309
      Last modified:January 25, 2012 - v2
      <p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i51CACE7EBEDD9530
      GO

      <p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

      There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
      EntryEntry nameProtein names
      Gene namesLengthAnnotation
      A0A1P8AXM8A0A1P8AXM8_ARATH
      Mechanosensitive ion channel protei...
      At2g17010, F6P23.17, F6P23_17
      669Annotation score:

      Annotation score:2 out of 5

      <p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

      Sequence databases

      Select the link destinations:

      EMBL nucleotide sequence database

      More...
      EMBLi

      GenBank nucleotide sequence database

      More...
      GenBanki

      DNA Data Bank of Japan; a nucleotide sequence database

      More...
      DDBJi
      Links Updated
      CP002685 Genomic DNA Translation: AEC06572.2

      NCBI Reference Sequences

      More...
      RefSeqi
      NP_001318236.1, NM_001335527.1

      Genome annotation databases

      Ensembl plant genome annotation project

      More...
      EnsemblPlantsi
      AT2G17010.1; AT2G17010.1; AT2G17010

      Database of genes from NCBI RefSeq genomes

      More...
      GeneIDi
      816204

      Gramene; a comparative resource for plants

      More...
      Gramenei
      AT2G17010.1; AT2G17010.1; AT2G17010

      KEGG: Kyoto Encyclopedia of Genes and Genomes

      More...
      KEGGi
      ath:AT2G17010

      <p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

      <p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

      Sequence databases

      Select the link destinations:
      EMBLi
      GenBanki
      DDBJi
      Links Updated
      CP002685 Genomic DNA Translation: AEC06572.2
      RefSeqiNP_001318236.1, NM_001335527.1

      3D structure databases

      Database of comparative protein structure models

      More...
      ModBasei
      Search...

      SWISS-MODEL Interactive Workspace

      More...
      SWISS-MODEL-Workspacei
      Submit a new modelling project...

      Protein-protein interaction databases

      STRINGi3702.AT2G17010.1

      Protein family/group databases

      TCDBi1.A.23.4.7, the small conductance mechanosensitive ion channel (mscs) family

      Proteomic databases

      PaxDbiF4IME2
      PRIDEiF4IME2
      ProteomicsDBi239008

      Genome annotation databases

      EnsemblPlantsiAT2G17010.1; AT2G17010.1; AT2G17010
      GeneIDi816204
      GrameneiAT2G17010.1; AT2G17010.1; AT2G17010
      KEGGiath:AT2G17010

      Organism-specific databases

      AraportiAT2G17010

      Phylogenomic databases

      eggNOGiKOG4629, Eukaryota
      InParanoidiF4IME2
      OMAiAEVIRCT
      OrthoDBi609350at2759

      Miscellaneous databases

      Protein Ontology

      More...
      PROi
      PR:F4IME2

      Gene expression databases

      ExpressionAtlasiF4IME2, baseline and differential

      Family and domain databases

      Gene3Di2.30.30.60, 1 hit
      InterProiView protein in InterPro
      IPR010920, LSM_dom_sf
      IPR016688, MscS-like_plants/fungi
      IPR006685, MscS_channel
      IPR023408, MscS_dom_sf
      PfamiView protein in Pfam
      PF00924, MS_channel, 1 hit
      PIRSFiPIRSF017209, Memb_At2g17000_prd, 1 hit
      SUPFAMiSSF50182, SSF50182, 1 hit

      MobiDB: a database of protein disorder and mobility annotations

      More...
      MobiDBi
      Search...

      <p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

      <p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiMSL8_ARATH
      <p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4IME2
      <p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 25, 2012
      Last sequence update: January 25, 2012
      Last modified: June 2, 2021
      This is version 57 of the entry and version 2 of the sequence. See complete history.
      <p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
      Annotation programPlant Protein Annotation Program

      <p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

      Keywords - Technical termi

      Reference proteome

      Documents

      1. Arabidopsis thaliana
        Arabidopsis thaliana: entries and gene names
      2. SIMILARITY comments
        Index of protein domains and families
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