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Protein

LysM domain receptor-like kinase 3

Gene

LYK3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Putative Lysin motif (LysM) receptor kinase that may recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei368ATPPROSITE-ProRule annotation1
Active sitei464Proton acceptorPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi347 – 355ATPPROSITE-ProRule annotation9

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionKinase, Receptor, Serine/threonine-protein kinase, Transferase
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
LysM domain receptor-like kinase 3 (EC:2.7.11.-)
Short name:
LysM-containing receptor-like kinase 3
Gene namesi
Name:LYK3
Ordered Locus Names:At1g51940
ORF Names:T14L22.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G51940
TAIRilocus:2195814 AT1G51940

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini20 – 236ExtracellularSequence analysisAdd BLAST217
Transmembranei237 – 257HelicalSequence analysisAdd BLAST21
Topological domaini258 – 651CytoplasmicSequence analysisAdd BLAST394

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_000042082920 – 651LysM domain receptor-like kinase 3Add BLAST632

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi2N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi23N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi24 ↔ 76By similarity
Disulfide bondi31 ↔ 133By similarity
Glycosylationi42N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi73N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi74 ↔ 131By similarity
Glycosylationi86N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi100N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi114N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi177N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi218N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi225N-linked (GlcNAc...) asparagineSequence analysis1
Modified residuei330PhosphothreonineBy similarity1
Modified residuei410PhosphotyrosineBy similarity1
Modified residuei468PhosphoserineBy similarity1
Modified residuei500PhosphothreonineBy similarity1
Modified residuei505PhosphothreonineBy similarity1
Modified residuei513PhosphotyrosineBy similarity1

Keywords - PTMi

Disulfide bond, Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiF4IB81

PTM databases

iPTMnetiF4IB81

Expressioni

Gene expression databases

ExpressionAtlasiF4IB81 baseline and differential
GenevisibleiF4IB81 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G51940.1

Structurei

3D structure databases

ProteinModelPortaliF4IB81
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini142 – 186LysMPROSITE-ProRule annotationAdd BLAST45
Domaini341 – 628Protein kinasePROSITE-ProRule annotationAdd BLAST288

Sequence similaritiesi

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IK61 Eukaryota
COG0515 LUCA
HOGENOMiHOG000116550
InParanoidiF4IB81
OMAiQNKGHTP
OrthoDBiEOG0936091T

Family and domain databases

CDDicd00118 LysM, 1 hit
Gene3Di3.10.350.10, 1 hit
InterProiView protein in InterPro
IPR011009 Kinase-like_dom_sf
IPR018392 LysM_dom
IPR036779 LysM_dom_sf
IPR000719 Prot_kinase_dom
IPR017441 Protein_kinase_ATP_BS
IPR001245 Ser-Thr/Tyr_kinase_cat_dom
IPR008271 Ser/Thr_kinase_AS
PfamiView protein in Pfam
PF01476 LysM, 1 hit
PF07714 Pkinase_Tyr, 1 hit
SMARTiView protein in SMART
SM00257 LysM, 1 hit
SM00220 S_TKc, 1 hit
SUPFAMiSSF56112 SSF56112, 1 hit
PROSITEiView protein in PROSITE
PS51782 LYSM, 1 hit
PS00107 PROTEIN_KINASE_ATP, 1 hit
PS50011 PROTEIN_KINASE_DOM, 1 hit
PS00108 PROTEIN_KINASE_ST, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

F4IB81-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNLTFYIFFL SLLPSFSSSK PMNCSDTTRL CSSFLAFKPN QNQSFSVIQS
60 70 80 90 100
MFDVLPQDIT ADISGGYFFI KKNCSCLTTT HQYTTNTTFT IRQNVGYVYN
110 120 130 140 150
VTVSAYSGLA FPPNTTRAAR AGAVVSVQLL CGCSSGLWNY LMSYVAMAGD
160 170 180 190 200
SVQSLSSRFG VSMDRIEDVN GILNLDNITA GDLLYIPLDS VPGEPYETSK
210 220 230 240 250
INPPAPSPAP ASSLANGNIS DDQVNHTAKS GSHVPYIWIV GGLGVVLALL
260 270 280 290 300
VLCILVCICL RSSSCSSSEE DGNGHNFQIL RKSGFFCGSG RYNCCRSGDF
310 320 330 340 350
RQTNGETQVV AIPKALGDGM FEIEKPMVFT YEEIRAATDE FSDSNLLGHG
360 370 380 390 400
NYGSVYFGLL REQEVAVKRM TATKTKEFAA EMKVLCKVHH SNLVELIGYA
410 420 430 440 450
ATVDELFVVY EYVRKGMLKS HLHDPQSKGN TPLSWIMRNQ IALDAARGLE
460 470 480 490 500
YIHEHTKTHY VHRDIKTSNI LLDEAFRAKI SDFGLAKLVE KTGEGEISVT
510 520 530 540 550
KVVGTYGYLA PEYLSDGLAT SKSDIYAFGV VLFEIISGRE AVIRTEAIGT
560 570 580 590 600
KNPERRPLAS IMLAVLKNSP DSMNMSSLKE FVDPNMMDLY PHDCLFKIAT
610 620 630 640 650
LAKQCVDDDP ILRPNMKQVV ISLSQILLSS IEWEATLAGN SQVFSGLVQG

R
Length:651
Mass (Da):71,445
Last modified:June 28, 2011 - v1
Checksum:iF0EBF68BF9D91F2D
GO

Sequence cautioni

The sequence AAF99862 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence BX816305 differs from that shown. Reason: Frameshift at position 307.Curated
The sequence BX816305 differs from that shown. Reason: Erroneous termination at position 269. Translated as Glu.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015448 Genomic DNA Translation: AAF99862.1 Different initiation.
CP002684 Genomic DNA Translation: AEE32737.1
BX816305 mRNA No translation available.
PIRiG96558
RefSeqiNP_175606.2, NM_104075.4
UniGeneiAt.27936

Genome annotation databases

EnsemblPlantsiAT1G51940.1; AT1G51940.1; AT1G51940
GeneIDi841622
GrameneiAT1G51940.1; AT1G51940.1; AT1G51940
KEGGiath:AT1G51940

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC015448 Genomic DNA Translation: AAF99862.1 Different initiation.
CP002684 Genomic DNA Translation: AEE32737.1
BX816305 mRNA No translation available.
PIRiG96558
RefSeqiNP_175606.2, NM_104075.4
UniGeneiAt.27936

3D structure databases

ProteinModelPortaliF4IB81
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G51940.1

PTM databases

iPTMnetiF4IB81

Proteomic databases

PaxDbiF4IB81

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G51940.1; AT1G51940.1; AT1G51940
GeneIDi841622
GrameneiAT1G51940.1; AT1G51940.1; AT1G51940
KEGGiath:AT1G51940

Organism-specific databases

AraportiAT1G51940
TAIRilocus:2195814 AT1G51940

Phylogenomic databases

eggNOGiENOG410IK61 Eukaryota
COG0515 LUCA
HOGENOMiHOG000116550
InParanoidiF4IB81
OMAiQNKGHTP
OrthoDBiEOG0936091T

Miscellaneous databases

PROiPR:F4IB81

Gene expression databases

ExpressionAtlasiF4IB81 baseline and differential
GenevisibleiF4IB81 AT

Family and domain databases

CDDicd00118 LysM, 1 hit
Gene3Di3.10.350.10, 1 hit
InterProiView protein in InterPro
IPR011009 Kinase-like_dom_sf
IPR018392 LysM_dom
IPR036779 LysM_dom_sf
IPR000719 Prot_kinase_dom
IPR017441 Protein_kinase_ATP_BS
IPR001245 Ser-Thr/Tyr_kinase_cat_dom
IPR008271 Ser/Thr_kinase_AS
PfamiView protein in Pfam
PF01476 LysM, 1 hit
PF07714 Pkinase_Tyr, 1 hit
SMARTiView protein in SMART
SM00257 LysM, 1 hit
SM00220 S_TKc, 1 hit
SUPFAMiSSF56112 SSF56112, 1 hit
PROSITEiView protein in PROSITE
PS51782 LYSM, 1 hit
PS00107 PROTEIN_KINASE_ATP, 1 hit
PS50011 PROTEIN_KINASE_DOM, 1 hit
PS00108 PROTEIN_KINASE_ST, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiLYK3_ARATH
AccessioniPrimary (citable) accession number: F4IB81
Secondary accession number(s): Q9FZA7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 9, 2013
Last sequence update: June 28, 2011
Last modified: May 23, 2018
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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