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Entry version 59 (17 Jun 2020)
Sequence version 1 (28 Jun 2011)
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Protein

THO complex subunit 2

Gene

THO2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Acts as component of the THO subcomplex of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-binding
Biological processmRNA processing, mRNA splicing, mRNA transport, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
THO complex subunit 2
Short name:
AtTHO2
Alternative name(s):
Protein EMBRYO DEFECTIVE 2793
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:THO2
Synonyms:EMB2793
Ordered Locus Names:At1g24706
ORF Names:F5A9.21/F5A9.22
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G24706

The Arabidopsis Information Resource

More...
TAIRi
locus:2826042 AT1G24706

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Embryonic lethality when homozygous.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004255831 – 1823THO complex subunit 2Add BLAST1823

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1646PhosphoserineCombined sources1
Modified residuei1696PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4IAT2

PRoteomics IDEntifications database

More...
PRIDEi
F4IAT2

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
246423 [F4IAT2-1]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4IAT2

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4IAT2 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
F4IAT2 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the THO complex, which is composed of THO1, THO2, THO3, THO5, THO6 and THO7.

1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
24318, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G24706.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
F4IAT2

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili935 – 1003Sequence analysisAdd BLAST69

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi964 – 969Nuclear localization signalSequence analysis6

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1601 – 1608Poly-Pro8
Compositional biasi1623 – 1693Arg-richAdd BLAST71

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the THOC2 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1874 Eukaryota
ENOG410XQ2A LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4IAT2

KEGG Orthology (KO)

More...
KOi
K12879

Database of Orthologous Groups

More...
OrthoDBi
979205at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR040007 Tho2
IPR021418 THO_THOC2_C
IPR021726 THO_THOC2_N
IPR032302 THOC2_N

The PANTHER Classification System

More...
PANTHERi
PTHR21597 PTHR21597, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11262 Tho2, 1 hit
PF11732 Thoc2, 1 hit
PF16134 THOC2_N, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 1 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoform i produced by alternative splicing. AlignAdd to basket
Note: A number of isoforms are produced. According to EST sequences.

This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: F4IAT2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSLPLLECKY VTEEFVREGK NGNYGTKLPS SVPMLRFLYE LSWILVRGEL
60 70 80 90 100
PIQSCKAVLE GVEFLDKPSR EELASCFADV VTQIAQDLTM SGDQRSRLIK
110 120 130 140 150
LAKWLVESQT VPQRLFQERC EEEFLWEADM VKIKAQDLKG KEVRLNTRLL
160 170 180 190 200
YQQTKFNLLR EESEGYAKLA TLLCRGSASS SHNASAATMG IIKSLIGHFD
210 220 230 240 250
LDPNRVFDIV LDCFELEQDY DTFLNLIPIF PKSHASQILG FKFQYYQRLE
260 270 280 290 300
VNSPVPVGLY KLTALLVKEE FINLESIYAH LLPKDEEVFE DYNVSSAKRF
310 320 330 340 350
EEANKIGKIN LAATGKDLME DEKQGDVTVD LFAALDMESE AVTERLPELE
360 370 380 390 400
NNQTLGLLNG FLSVDDWYHA NILFERLAPL NPVAHDQICS GLFRLIEKSI
410 420 430 440 450
THSYRIARQT RFQSSSSAST VKLTPTANTT ANRTYLDLPK EVFQMLVTVG
460 470 480 490 500
PYLYRNTQLL QKICRVLRAY YLSALDLVRD GSNQEGSAYE VSRGHLKEVR
510 520 530 540 550
LRVEEALGTC LLPSLQLVPA NPAVGHEIWE VMSLLPYEAR YRLYGEWEKD
560 570 580 590 600
DEQNPLLLAA RQVAKLDTRR ILKRLAKENL KQLGRMVAKL AHANPMTVLR
610 620 630 640 650
TIVNQIEAYR DMIAPVVDAF KYLTQLEYDI LEYVVIERLA QSGRDKLKDD
660 670 680 690 700
GINLSDWLQS LASFWGHLCK KYPSMELRGL FQYLVNQLKR GQGIELVLLQ
710 720 730 740 750
ELVQQMANVQ YTENLTEDQL DAMAGSETLR YHATSFGMMR NNKALIKSSN
760 770 780 790 800
RLRDSLLPND EPKLAIPLLL LIAQHRSLVV VNADAPYIKM VTEQFDRCHG
810 820 830 840 850
ILLQYVDFLS SAVSPTTAYA RLVPSLDELV HTYHLEAEVA FLVFRPVMRL
860 870 880 890 900
FKCRRNGDVS WPLDSGESMD ADSEISESES SMILDVGTSE KAVTWSDVLD
910 920 930 940 950
TVRTMLPSKA WNSLSPDLYA TFWGLTLYDL HVPRNRYESE ISKQHTALKT
960 970 980 990 1000
LEEVADNSSS AITKRKKEKE RIQESLDRLT GELKKHEEHV ASVRRRLSRE
1010 1020 1030 1040 1050
KDTWLSSCPD TLKINMEFLQ RCIFPRCTFS MADSVYCAMF VNMLHSLGTP
1060 1070 1080 1090 1100
FFNTVNHIDV LICKTLQPMI CCCTEYEVGR LGRFLFETLK IAYHWKSKES
1110 1120 1130 1140 1150
VYEHECGNMP GFAVYYRYPN SQRVTFGQFV KVHWKWSGRI TRLLIQCLES
1160 1170 1180 1190 1200
NEYMEIRNAL IMLTKISGVF PVTRKTGINL EKRATKIKND EREDLKVLAT
1210 1220 1230 1240 1250
GVGAALSARK PHWVTDEEFS MGFLELKAPP VHTPKHASSQ NGLLVGVSQG
1260 1270 1280 1290 1300
EPTGERATVN QQPESGGLGK DQMLKTKPLD GRTESIPSKS DQGHLKSKGG
1310 1320 1330 1340 1350
NPLDSQPSIS KKSMEQKETD ETPRISDENP VKPASKYSEA ELKASSKRGA
1360 1370 1380 1390 1400
SVNKSAKQDF GKDDGKSGKA IGRTSTADKD LNYLESRQSG LTKALSSTAA
1410 1420 1430 1440 1450
NGSIATGSSK VKDDGAEALD AQKQSSRTVH SPRHEIVTSV RSSDRLQKRA
1460 1470 1480 1490 1500
NAVEDSERIS KRRKGDAEHK EHDSEPRSSD RDRSVEARLD LNKTVTDDQS
1510 1520 1530 1540 1550
THRDQDRSKD KGYERQDRDH RERVDRSDKP RGDDVEKARD KSLERHGRER
1560 1570 1580 1590 1600
SVEKGLDKGT TRSYDRNKDE RNKDDRSKLR HSEASLEKSH PDDHFHSQGL
1610 1620 1630 1640 1650
PPPPPLPPNI IPHSMAAKED LERRAGGARH SQRLSPRHEE REKRRSEENL
1660 1670 1680 1690 1700
SVSVDDAKRR RDDDIRDRKR DDRETITVKG EERERERERE REREKSLPLK
1710 1720 1730 1740 1750
EDFEASKRRK LKREQQVPSA EPGEYSPMPH HSSLSTSMGP SSYEGRERKS
1760 1770 1780 1790 1800
SSMIQHGGYL EEPSIRLLGK EASSKMARRD PDPIAKSKSK NSNFLDIALE
1810 1820
SMTVNGKTTR GEQSGSGEIG SRE
Length:1,823
Mass (Da):207,075
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9C112EB30AF39DAA
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F4IAT3F4IAT3_ARATH
THO2
THO2 AtTHO2, EMB2793, EMBRYO DEFECTIVE 2793, At1g24706, F5A9.21
1,804Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8ARZ0A0A1P8ARZ0_ARATH
THO2
THO2 AtTHO2, EMB2793, EMBRYO DEFECTIVE 2793, At1g24706, F5A9.21
1,616Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8AS05A0A1P8AS05_ARATH
THO2
THO2 AtTHO2, EMB2793, EMBRYO DEFECTIVE 2793, At1g24706, F5A9.21
1,715Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8ARY6A0A1P8ARY6_ARATH
THO2
THO2 AtTHO2, EMB2793, EMBRYO DEFECTIVE 2793, At1g24706, F5A9.21
1,804Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1P8AS07A0A1P8AS07_ARATH
THO2
THO2 AtTHO2, EMB2793, EMBRYO DEFECTIVE 2793, At1g24706, F5A9.21
1,805Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A178W886A0A178W886_ARATH
THO2
THO2 AtTHO2, EMB2793, EMBRYO DEFECTIVE 2793, At1g24706, F5A9.21
1,785Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAG03121 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes.Curated
The sequence AAG03122 differs from that shown. Reason: Erroneous gene model prediction. Was originally thought to correspond to two different genes.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti615P → S in AAO00879 (Ref. 4) Curated1
Sequence conflicti615P → S in BAE99240 (Ref. 4) Curated1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC004133 Genomic DNA Translation: AAG03121.1 Sequence problems.
AC004133 Genomic DNA Translation: AAG03122.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE30558.1
BT002519 mRNA Translation: AAO00879.1
AK227201 mRNA Translation: BAE99240.1

Protein sequence database of the Protein Information Resource

More...
PIRi
H86379

NCBI Reference Sequences

More...
RefSeqi
NP_001185086.1, NM_001198157.1 [F4IAT2-1]

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G24706.2; AT1G24706.2; AT1G24706 [F4IAT2-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
839081

Gramene; a comparative resource for plants

More...
Gramenei
AT1G24706.2; AT1G24706.2; AT1G24706 [F4IAT2-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G24706

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC004133 Genomic DNA Translation: AAG03121.1 Sequence problems.
AC004133 Genomic DNA Translation: AAG03122.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE30558.1
BT002519 mRNA Translation: AAO00879.1
AK227201 mRNA Translation: BAE99240.1
PIRiH86379
RefSeqiNP_001185086.1, NM_001198157.1 [F4IAT2-1]

3D structure databases

SMRiF4IAT2
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi24318, 2 interactors
STRINGi3702.AT1G24706.2

PTM databases

iPTMnetiF4IAT2

Proteomic databases

PaxDbiF4IAT2
PRIDEiF4IAT2
ProteomicsDBi246423 [F4IAT2-1]

Genome annotation databases

EnsemblPlantsiAT1G24706.2; AT1G24706.2; AT1G24706 [F4IAT2-1]
GeneIDi839081
GrameneiAT1G24706.2; AT1G24706.2; AT1G24706 [F4IAT2-1]
KEGGiath:AT1G24706

Organism-specific databases

AraportiAT1G24706
TAIRilocus:2826042 AT1G24706

Phylogenomic databases

eggNOGiKOG1874 Eukaryota
ENOG410XQ2A LUCA
InParanoidiF4IAT2
KOiK12879
OrthoDBi979205at2759

Miscellaneous databases

Protein Ontology

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PROi
PR:F4IAT2

Gene expression databases

ExpressionAtlasiF4IAT2 baseline and differential
GenevisibleiF4IAT2 AT

Family and domain databases

InterProiView protein in InterPro
IPR040007 Tho2
IPR021418 THO_THOC2_C
IPR021726 THO_THOC2_N
IPR032302 THOC2_N
PANTHERiPTHR21597 PTHR21597, 1 hit
PfamiView protein in Pfam
PF11262 Tho2, 1 hit
PF11732 Thoc2, 1 hit
PF16134 THOC2_N, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTHOC2_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4IAT2
Secondary accession number(s): Q8GUG8, Q9FXJ7, Q9FXJ8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 19, 2014
Last sequence update: June 28, 2011
Last modified: June 17, 2020
This is version 59 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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