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UniProtKB - F4I8H8 (GDPD4_ARATH)
Protein
Glycerophosphodiester phosphodiesterase GDPD4
Gene
GDPD4
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Functioni
Catalytic activityi
- EC:3.1.4.46By similarity
GO - Molecular functioni
- glycerophosphodiester phosphodiesterase activity Source: UniProtKB-EC
GO - Biological processi
- glycerol metabolic process Source: UniProtKB-KW
- lipid metabolic process Source: InterPro
Keywordsi
Molecular function | Hydrolase |
Biological process | Glycerol metabolism |
Names & Taxonomyi
Protein namesi | Recommended name: Glycerophosphodiester phosphodiesterase GDPD4Curated (EC:3.1.4.46By similarity)Alternative name(s): Glycerophosphodiester phosphodiesterase 41 Publication Short name: ATGDPD41 Publication |
Gene namesi | Name:GDPD41 Publication Ordered Locus Names:At1g71340Imported ORF Names:F3I17.1Imported |
Organismi | Arabidopsis thaliana (Mouse-ear cress)Imported |
Taxonomic identifieri | 3702 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Proteomesi |
|
Organism-specific databases
Araporti | AT1G71340 |
TAIRi | locus:2032323, AT1G71340 |
Subcellular locationi
Other locations
- Membrane Sequence analysis; Single-pass membrane protein Sequence analysis
Other locations
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 35 – 55 | HelicalSequence analysisAdd BLAST | 21 |
Keywords - Cellular componenti
MembranePTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000430610 | 1 – 328 | Glycerophosphodiester phosphodiesterase GDPD4Add BLAST | 328 |
Proteomic databases
PaxDbi | F4I8H8 |
ProteomicsDBi | 247117 |
Expressioni
Tissue specificityi
Expressed in rosette and cauline leaves.1 Publication
Gene expression databases
ExpressionAtlasi | F4I8H8, baseline and differential |
Genevisiblei | F4I8H8, AT |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 73 – 312 | GP-PDESequence analysisAdd BLAST | 240 |
Sequence similaritiesi
Belongs to the glycerophosphoryl diester phosphodiesterase family.Curated
Keywords - Domaini
Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | KOG2258, Eukaryota |
HOGENOMi | CLU_055532_0_0_1 |
InParanoidi | F4I8H8 |
OMAi | QCKNCIV |
OrthoDBi | 1218115at2759 |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR044236, GDPD4 IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
PANTHERi | PTHR47449, PTHR47449, 1 hit |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
i Sequence
Sequence statusi: Complete.
F4I8H8-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAIFEWRHRR RPFDGGGTRR RRFFSPLYSR NFKRTILFAV IFLAIFPPLY
60 70 80 90 100
FHFKLRRIRQ IVAQKCDWLH HPPLVCAHGG DSTLAFPNTM DAYSFAIRSR
110 120 130 140 150
VDCIEVDVSR SSDGVLFALH NRDLQRIARN SSVQVGDLSM KQIKELDVSE
160 170 180 190 200
IVKGTLGSSR IPTLEEALAL ISNSVRKVIL DAKVGPPMYE KGLAQDILSI
210 220 230 240 250
IERAQCNNCI VWAKSDTLAR DIIRRAPDTM VGYIVMVDPL TGARNSLLRM
260 270 280 290 300
KGARVVGVYH PLIDEELVRV VRRRNKEVYA WTVDDADPMK RMLHLGVDAV
310 320
VTSDPSMFQG LMEDLRTECL EEGFSIRT
Sequence cautioni
The sequence AAG51889 differs from that shown. Reason: Erroneous gene model prediction.
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC016162 Genomic DNA Translation: AAG51889.1 Sequence problems. CP002684 Genomic DNA Translation: AEE35191.1 |
PIRi | C96738 |
RefSeqi | NP_177290.3, NM_105803.5 |
Genome annotation databases
EnsemblPlantsi | AT1G71340.1; AT1G71340.1; AT1G71340 |
GeneIDi | 843475 |
Gramenei | AT1G71340.1; AT1G71340.1; AT1G71340 |
KEGGi | ath:AT1G71340 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC016162 Genomic DNA Translation: AAG51889.1 Sequence problems. CP002684 Genomic DNA Translation: AEE35191.1 |
PIRi | C96738 |
RefSeqi | NP_177290.3, NM_105803.5 |
3D structure databases
AlphaFoldDBi | F4I8H8 |
SMRi | F4I8H8 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 3702.AT1G71340.1 |
Proteomic databases
PaxDbi | F4I8H8 |
ProteomicsDBi | 247117 |
Genome annotation databases
EnsemblPlantsi | AT1G71340.1; AT1G71340.1; AT1G71340 |
GeneIDi | 843475 |
Gramenei | AT1G71340.1; AT1G71340.1; AT1G71340 |
KEGGi | ath:AT1G71340 |
Organism-specific databases
Araporti | AT1G71340 |
TAIRi | locus:2032323, AT1G71340 |
Phylogenomic databases
eggNOGi | KOG2258, Eukaryota |
HOGENOMi | CLU_055532_0_0_1 |
InParanoidi | F4I8H8 |
OMAi | QCKNCIV |
OrthoDBi | 1218115at2759 |
Miscellaneous databases
PROi | PR:F4I8H8 |
Gene expression databases
ExpressionAtlasi | F4I8H8, baseline and differential |
Genevisiblei | F4I8H8, AT |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR044236, GDPD4 IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
PANTHERi | PTHR47449, PTHR47449, 1 hit |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | GDPD4_ARATH | |
Accessioni | F4I8H8Primary (citable) accession number: F4I8H8 Secondary accession number(s): Q9FVW0 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | October 29, 2014 |
Last sequence update: | June 28, 2011 | |
Last modified: | May 25, 2022 | |
This is version 59 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Arabidopsis thaliana
Arabidopsis thaliana: entries and gene names - SIMILARITY comments
Index of protein domains and families