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Entry version 54 (07 Oct 2020)
Sequence version 1 (28 Jun 2011)
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Protein

Putative WEB family protein At1g65010, chloroplastic

Gene

At1g65010

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative WEB family protein At1g65010, chloroplastic
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g65010
ORF Names:F13O11.30
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G65010

The Arabidopsis Information Resource

More...
TAIRi
locus:2010826, AT1G65010

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Chloroplast, Plastid

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 79ChloroplastSequence analysisAdd BLAST79
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000041406780 – 1345Putative WEB family protein At1g65010, chloroplasticAdd BLAST1266

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1279PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4I8B9

PRoteomics IDEntifications database

More...
PRIDEi
F4I8B9

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
243052

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4I8B9

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4I8B9, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
F4I8B9, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
28030, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT1G65010.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
F4I8B9

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili78 – 147Sequence analysisAdd BLAST70
Coiled coili252 – 1162Sequence analysisAdd BLAST911

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi17 – 22Poly-Pro6
Compositional biasi117 – 1292Glu-richAdd BLAST1176
Compositional biasi1338 – 1343Poly-Ser6

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the WEB family.Curated

Keywords - Domaini

Coiled coil, Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QSCE, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_267899_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4I8B9

Identification of Orthologs from Complete Genome Data

More...
OMAi
KDDQLHR

Database of Orthologous Groups

More...
OrthoDBi
286809at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008545, Web

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05701, WEMBL, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

F4I8B9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASRTKTGLM ETPRSKPSPP PPRLSKLSAS KSDSNSASPV PNTRLSLDRS
60 70 80 90 100
PPTVNSKPTP DRRPSRIPTP EKVHSRLVKG TELQTQLNQI QEDLKKADEQ
110 120 130 140 150
IELLKKDKAK AIDDLKESEK LVEEANEKLK EALAAQKRAE ESFEVEKFRA
160 170 180 190 200
VELEQAGLEA VQKKDVTSKN ELESIRSQHA LDISALLSTT EELQRVKHEL
210 220 230 240 250
SMTADAKNKA LSHAEEATKI AEIHAEKAEI LASELGRLKA LLGSKEEKEA
260 270 280 290 300
IEGNEIVSKL KSEIELLRGE LEKVSILESS LKEQEGLVEQ LKVDLEAAKM
310 320 330 340 350
AESCTNSSVE EWKNKVHELE KEVEESNRSK SSASESMESV MKQLAELNHV
360 370 380 390 400
LHETKSDNAA QKEKIELLEK TIEAQRTDLE EYGRQVCIAK EEASKLENLV
410 420 430 440 450
ESIKSELEIS QEEKTRALDN EKAATSNIQN LLDQRTELSI ELERCKVEEE
460 470 480 490 500
KSKKDMESLT LALQEASTES SEAKATLLVC QEELKNCESQ VDSLKLASKE
510 520 530 540 550
TNEKYEKMLE DARNEIDSLK STVDSIQNEF ENSKAGWEQK ELHLMGCVKK
560 570 580 590 600
SEEENSSSQE EVSRLVNLLK ESEEDACARK EEEASLKNNL KVAEGEVKYL
610 620 630 640 650
QETLGEAKAE SMKLKESLLD KEEDLKNVTA EISSLREWEG SVLEKIEELS
660 670 680 690 700
KVKESLVDKE TKLQSITQEA EELKGREAAH MKQIEELSTA NASLVDEATK
710 720 730 740 750
LQSIVQESED LKEKEAGYLK KIEELSVANE SLADNVTDLQ SIVQESKDLK
760 770 780 790 800
EREVAYLKKI EELSVANESL VDKETKLQHI DQEAEELRGR EASHLKKIEE
810 820 830 840 850
LSKENENLVD NVANMQNIAE ESKDLREREV AYLKKIDELS TANGTLADNV
860 870 880 890 900
TNLQNISEEN KELRERETTL LKKAEELSEL NESLVDKASK LQTVVQENEE
910 920 930 940 950
LRERETAYLK KIEELSKLHE ILSDQETKLQ ISNHEKEELK ERETAYLKKI
960 970 980 990 1000
EELSKVQEDL LNKENELHGM VVEIEDLRSK DSLAQKKIEE LSNFNASLLI
1010 1020 1030 1040 1050
KENELQAVVC ENEELKSKQV STLKTIDELS DLKQSLIHKE KELQAAIVEN
1060 1070 1080 1090 1100
EKLKAEAALS LQRIEELTNL KQTLIDKQNE LQGVFHENEE LKAKEASSLK
1110 1120 1130 1140 1150
KIDELLHLEQ SWLEKESEFQ RVTQENLELK TQDALAAKKI EELSKLKESL
1160 1170 1180 1190 1200
LEKETELKCR EAAALEKMEE PSKHGNSELN SIGKDYDLVQ FSEVNGASNG
1210 1220 1230 1240 1250
DEKTKTDHYQ QRSREHMIQE SPMEAIDKHL MGERAAIHKV AHRVEGERNV
1260 1270 1280 1290 1300
EKESEFKMWD SYKIEKSEVS PERETELDSV EEEVDSKAES SENMDQYSNG
1310 1320 1330 1340
FSLTDHTEDS GNLLLKEQHM KKKKPLLRKF GNLLKKKSTS SSSQK
Length:1,345
Mass (Da):152,702
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1088329BCF8E0D68
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAD38273 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC006193 Genomic DNA Translation: AAD38273.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE34315.1

Protein sequence database of the Protein Information Resource

More...
PIRi
F96673

NCBI Reference Sequences

More...
RefSeqi
NP_176681.4, NM_105175.6

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G65010.1; AT1G65010.1; AT1G65010

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
842809

Gramene; a comparative resource for plants

More...
Gramenei
AT1G65010.1; AT1G65010.1; AT1G65010

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G65010

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006193 Genomic DNA Translation: AAD38273.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE34315.1
PIRiF96673
RefSeqiNP_176681.4, NM_105175.6

3D structure databases

SMRiF4I8B9
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi28030, 1 interactor
STRINGi3702.AT1G65010.1

PTM databases

iPTMnetiF4I8B9

Proteomic databases

PaxDbiF4I8B9
PRIDEiF4I8B9
ProteomicsDBi243052

Genome annotation databases

EnsemblPlantsiAT1G65010.1; AT1G65010.1; AT1G65010
GeneIDi842809
GrameneiAT1G65010.1; AT1G65010.1; AT1G65010
KEGGiath:AT1G65010

Organism-specific databases

AraportiAT1G65010
TAIRilocus:2010826, AT1G65010

Phylogenomic databases

eggNOGiENOG502QSCE, Eukaryota
HOGENOMiCLU_267899_0_0_1
InParanoidiF4I8B9
OMAiKDDQLHR
OrthoDBi286809at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4I8B9

Gene expression databases

ExpressionAtlasiF4I8B9, baseline and differential
GenevisibleiF4I8B9, AT

Family and domain databases

InterProiView protein in InterPro
IPR008545, Web
PfamiView protein in Pfam
PF05701, WEMBL, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiY1501_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4I8B9
Secondary accession number(s): Q9XIP6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 14, 2011
Last sequence update: June 28, 2011
Last modified: October 7, 2020
This is version 54 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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