Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Nuclear pore complex protein NUP214

Gene

NUP214

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for normal embryogenesis and seed viability. Involved in the first asymmetrical cell division of the zygote. Regulates the number and planes of cell divisions required for generating the normal embryo proper and suspensor, apical-basal axis, cotyledons and meristem.2 Publications

Miscellaneous

Named LONO after an Hawaiian god associated with fertility, agriculture, rainfall and music.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • nuclear localization sequence binding Source: GO_Central
  • structural constituent of nuclear pore Source: GO_Central

GO - Biological processi

  • embryo development ending in seed dormancy Source: TAIR
  • mRNA transport Source: UniProtKB-KW
  • protein import into nucleus Source: GO_Central
  • zygote asymmetric cell division Source: TAIR

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processmRNA transport, Protein transport, Translocation, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Nuclear pore complex protein NUP2141 Publication
Alternative name(s):
Nucleoporin 214
Protein EMBRYO DEFECTIVE 10111 Publication
Protein LNO11 Publication
Protein LONO11 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NUP2141 Publication
Synonyms:EMB10111 Publication, LNO11 Publication
Ordered Locus Names:At1g55540Imported
ORF Names:T5A14.5Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G55540

The Arabidopsis Information Resource

More...
TAIRi
locus:2193849 AT1G55540

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nuclear pore complex, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the ‘Pathology and Biotech’ section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Lethal when homozygous. Knockdown alleles have no obvious defect in growth and development.1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004310791 – 1819Nuclear pore complex protein NUP214Add BLAST1819

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4I1T7

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4I1T7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Highly expressed in reproductive tissues, such as flowers and early developing seeds. Detected at low levels in vegetative tissues, such as leaves, shoots, stems or roots. Expressed in anthers, stigma papilla, embryo and endosperm.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4I1T7 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
F4I1T7 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the nuclear pore complex (NPC). The NPC has an eight-fold symmetrical structure comprising a central transport channel and two rings, the cytoplasmic and nuclear rings, to which eight filaments are attached. The cytoplasmic filaments have loose ends, while the nuclear filaments are joined in a distal ring, forming a nuclear basket. NPCs are highly dynamic in configuration and composition, and can be devided in 3 subcomplexes, the NUP62 subcomplex, the NUP107-160 subcomplex and the NUP93 subcomplex, containing approximately 30 different nucleoporin proteins Interacts (via N-terminus) with RH38.1 Publication1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
27227, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT1G55540.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
F4I1T7

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati533 – 53412
Repeati550 – 55122
Repeati586 – 58732
Repeati1204 – 120542
Repeati1226 – 122752
Repeati1307 – 130862
Repeati1527 – 152872
Repeati1559 – 156082
Repeati1562 – 156392
Repeati1578 – 1579102
Repeati1582 – 1583112
Repeati1621 – 1622122
Repeati1637 – 1638132
Repeati1657 – 1658142
Repeati1672 – 1673152
Repeati1678 – 1679162
Repeati1750 – 1751172
Repeati1760 – 1761182
Repeati1781 – 1782192
Repeati1784 – 1785202
Repeati1800 – 1801212

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni533 – 180121 X 2 AA repeats of F-GAdd BLAST1269

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili839 – 868Sequence analysisAdd BLAST30

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi996 – 999Poly-ArgSequence analysis4
Compositional biasi1190 – 1525Ser-richPROSITE-ProRule annotationAdd BLAST336
Compositional biasi1586 – 1589Poly-ThrSequence analysis4
Compositional biasi1636 – 1808Gly-richPROSITE-ProRule annotationAdd BLAST173
Compositional biasi1690 – 1742Ala-richPROSITE-ProRule annotationAdd BLAST53

<p>This subsection of the ‘Family and domains’ section provides general information on the biological role of a domain. The term ‘domain’ is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

Contains FG repeats mediating the translocation through the NPC by interacting with transport factors.Curated

Keywords - Domaini

Coiled coil, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IGCH Eukaryota
ENOG411262D LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000176343

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4I1T7

KEGG Orthology (KO)

More...
KOi
K14317

Identification of Orthologs from Complete Genome Data

More...
OMAi
KWVKESA

Database of Orthologous Groups

More...
OrthoDBi
EOG093600C2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026054 Nucleoporin

The PANTHER Classification System

More...
PANTHERi
PTHR23193 PTHR23193, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: F4I1T7-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSRVEIEEDT EGDRISTNDY YFERIGEPIS IKEDDAQYDL ENPPSQPLAI
60 70 80 90 100
SERHAVLFVA HSSGFFVGRT NDVISASKNS NGNGDKVFIQ DLSLVDVPVG
110 120 130 140 150
DVRILSLSAD DSILAVTVAA DIHFFSVDSL LKKDAKPSFS YSPDESGFVK
160 170 180 190 200
DFRWRRNDKH SYLVLSNTGK LFHGIDNAPP RHVMDAVDAV EWSSKGSYIA
210 220 230 240 250
VAQDNSLRIF SSKFNEKRCI ALSFDSWIGD SDEDCFVKVD SIRWVRNNCI
260 270 280 290 300
LLGCFQLIEG REENYLVQVI RSPDGKISDG STNLVALSFS DLFPCSMDDL
310 320 330 340 350
VPVGVGPHLL FSYIDQCKLA VTANRKSIDE HIVLLDWSSG DDKSAVSVVD
360 370 380 390 400
IDRETFLPRI GLQENNDDNT VMGLCIDRVS IEGTVNVRSG DDELKELQPY
410 420 430 440 450
FVLVCLTLEG KLVMFNVASV AGRPASSDTD LASSSDIEDA YTPLIEDDLS
460 470 480 490 500
KQSSEKHQQL NIAVQNDQKH LNTEKFSTEQ RLPNENIFSK EFESVKSSVS
510 520 530 540 550
GDNNKKQEPY AEKPLQVEDA QQSMIPRLSG TSFGQLPMSL GYDTNKFAGF
560 570 580 590 600
GPALPVSEKL QKDIFAQSNS MHLQANVESK STAAFFGSPG LQNAILQSPQ
610 620 630 640 650
NTSSQPWSSG KSVSPPDFVS GPFPSMRDTQ HKQSVQSGTG YVNPPMSIKD
660 670 680 690 700
KSVQVIETGR VSALSNLSPL LGQNQDTNEG VEKIEPIPSI RASQLSQQVK
710 720 730 740 750
SSFEKSASHQ QHKTPLSTGP LRLEHNMSNQ PSNINEMARE MDTLLQSIEG
760 770 780 790 800
PGGFKDSCAF ILKSNVEELE QGLESLAGKC QTWKSTIHEQ QAEIQHLLDK
810 820 830 840 850
TIQVLAKKTY MEGMYKQTAD NQYWQLWNRQ KLNPELEAKR QHIMKLNKDL
860 870 880 890 900
THQLIELERY FNRLELDRYN EDGGHPVARR GVPNRSAPSR RVQSLHSLHN
910 920 930 940 950
TMSSQLAAAE QLSECLSKQM TYLKIDSPVK KNVKQELFET IGIPYDASFS
960 970 980 990 1000
SPDAVKAKNA SSAKNLLLSS IPASINQQSR QRQSSAMKNS DPETARRRRE
1010 1020 1030 1040 1050
SLDRVIFNWA AFEPPKTTVK RMLLQEQQKT GMNQQTVLSE RLRSANNTQD
1060 1070 1080 1090 1100
RSLLHVKDHA SPVVSSNKGI MESFQQDTSE AQSTPFKTRP PMPQSNSPFT
1110 1120 1130 1140 1150
ISPISASKPS FNWSGNKSSN TTSYAEESAP SQIKDTRTVS QPGGSSFLPK
1160 1170 1180 1190 1200
RPVASTVLEQ TEKKAGEFKF SEAKANAFVE TAAGSVQRLS TTSSGSDFES
1210 1220 1230 1240 1250
SKGFGAQFST MSSGAPASSF SSKSLFGFNS SSSIPGDKFT FPAVTAPLSG
1260 1270 1280 1290 1300
TPLDSTSTLF TASSAPVSSS SQDPVPASIP ISSAPVPQTF SVTSTSTVSA
1310 1320 1330 1340 1350
TGFNVPFGKP LTSVKVDLNQ AAPSTPSPSP GPTAGFTFNL PALSPSSPEM
1360 1370 1380 1390 1400
VSSSTGQSSL FPPSAPTSQV SSDQASATSS LTDSSRLFSS TSLSSTPPIT
1410 1420 1430 1440 1450
PPDAFQSPQV STPSSAVPIT EPVSEPKKPE AQSSSILSTQ STVDSVANAT
1460 1470 1480 1490 1500
KTQNEPLPVK SEISNPGTTV TPVSSSGFLS GFSSGTQSSL ASMAAPSFSW
1510 1520 1530 1540 1550
PGSSQPQQLS STPAPFPASS PTSASPFGEK KDIVDTQEDE MDEEAPEASQ
1560 1570 1580 1590 1600
TTELSMGSFG GFGLGSTPNP GAPKTNPFGG PFGNATTTTS NPFNMTVPSG
1610 1620 1630 1640 1650
ELFKPASFNF QNPQPSQPAG FGSFSVTPSQ TPAQSGFGQP SQIGGGQQAL
1660 1670 1680 1690 1700
GSVLGSFGQS RQIGAGLPGA TFGSPTGFGG SNPGSGLPNA PASGGFAAAG
1710 1720 1730 1740 1750
SSATGGFAAM ASAGRGFAGA SSTPTGGFAA LASGSGGFAG AAPGGGGGGF
1760 1770 1780 1790 1800
GGLGSGTGGF GGFAPQGSSG GFAGAAGGGG FGGFGGQAQG QAGGGGFSAF
1810
GGNSGATGKP SELFTQMRK
Length:1,819
Mass (Da):192,930
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2F5771A153DB287B
GO
Isoform 2 (identifier: F4I1T7-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1005-1007: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:1,816
Mass (Da):192,570
Checksum:i0A03BCD81A9361F1
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAD10642 differs from that shown. Reason: Erroneous gene model prediction.Curated

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0571261005 – 1007Missing in isoform 2. 3

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC005223 Genomic DNA Translation: AAD10642.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33262.1
CP002684 Genomic DNA Translation: AEE33263.1
AY035068 mRNA Translation: AAK59573.2

Protein sequence database of the Protein Information Resource

More...
PIRi
H96597

NCBI Reference Sequences

More...
RefSeqi
NP_001117499.2, NM_001124027.2 [F4I1T7-1]
NP_564694.2, NM_104429.4 [F4I1T7-2]

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
At.19173

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G55540.1; AT1G55540.1; AT1G55540 [F4I1T7-2]
AT1G55540.2; AT1G55540.2; AT1G55540 [F4I1T7-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
842002

Gramene; a comparative resource for plants

More...
Gramenei
AT1G55540.1; AT1G55540.1; AT1G55540 [F4I1T7-2]
AT1G55540.2; AT1G55540.2; AT1G55540 [F4I1T7-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G55540

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005223 Genomic DNA Translation: AAD10642.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33262.1
CP002684 Genomic DNA Translation: AEE33263.1
AY035068 mRNA Translation: AAK59573.2
PIRiH96597
RefSeqiNP_001117499.2, NM_001124027.2 [F4I1T7-1]
NP_564694.2, NM_104429.4 [F4I1T7-2]
UniGeneiAt.19173

3D structure databases

ProteinModelPortaliF4I1T7
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi27227, 1 interactor
STRINGi3702.AT1G55540.2

PTM databases

iPTMnetiF4I1T7

Proteomic databases

PaxDbiF4I1T7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G55540.1; AT1G55540.1; AT1G55540 [F4I1T7-2]
AT1G55540.2; AT1G55540.2; AT1G55540 [F4I1T7-1]
GeneIDi842002
GrameneiAT1G55540.1; AT1G55540.1; AT1G55540 [F4I1T7-2]
AT1G55540.2; AT1G55540.2; AT1G55540 [F4I1T7-1]
KEGGiath:AT1G55540

Organism-specific databases

AraportiAT1G55540
TAIRilocus:2193849 AT1G55540

Phylogenomic databases

eggNOGiENOG410IGCH Eukaryota
ENOG411262D LUCA
HOGENOMiHOG000176343
InParanoidiF4I1T7
KOiK14317
OMAiKWVKESA
OrthoDBiEOG093600C2

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4I1T7

Gene expression databases

ExpressionAtlasiF4I1T7 baseline and differential
GenevisibleiF4I1T7 AT

Family and domain databases

InterProiView protein in InterPro
IPR026054 Nucleoporin
PANTHERiPTHR23193 PTHR23193, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNP214_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4I1T7
Secondary accession number(s): F4I1T6, Q94C88, Q9ZVV0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 26, 2014
Last sequence update: June 28, 2011
Last modified: November 7, 2018
This is version 54 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again