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Entry version 64 (16 Oct 2019)
Sequence version 1 (28 Jun 2011)
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Protein

Nuclear pore complex protein NUP155

Gene

NUP155

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Major component of the nuclear pore complex (NPC).1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processmRNA transport, Protein transport, Translocation, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Nuclear pore complex protein NUP1551 Publication
Alternative name(s):
Nucleoporin 155Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NUP1551 Publication
Ordered Locus Names:At1g14850Imported
ORF Names:F10B6.25Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G14850

The Arabidopsis Information Resource

More...
TAIRi
locus:2006802 AT1G14850

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nuclear pore complex, Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section indicates that the initiator methionine is cleaved from the mature protein.<p><a href='/help/init_met' target='_top'>More...</a></p>Initiator methionineiRemovedCombined sources
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004310772 – 1464Nuclear pore complex protein NUP155Add BLAST1463

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei2N-acetylserineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
F4HXV6

PRoteomics IDEntifications database

More...
PRIDEi
F4HXV6

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
F4HXV6

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F4HXV6 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
F4HXV6 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Part of the nuclear pore complex (NPC). The NPC has an eight-fold symmetrical structure comprising a central transport channel and two rings, the cytoplasmic and nuclear rings, to which eight filaments are attached. The cytoplasmic filaments have loose ends, while the nuclear filaments are joined in a distal ring, forming a nuclear basket. NPCs are highly dynamic in configuration and composition, and can be devided in 3 subcomplexes, the NUP62 subcomplex, the NUP107-160 subcomplex and the NUP93 subcomplex, containing approximately 30 different nucleoporin proteins.

1 Publication

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
23290, 5 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT1G14850.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi426 – 469Ser-richPROSITE-ProRule annotationAdd BLAST44

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1900 Eukaryota
COG5308 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000084151

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F4HXV6

KEGG Orthology (KO)

More...
KOi
K14312

Identification of Orthologs from Complete Genome Data

More...
OMAi
DYTHPNP

Database of Orthologous Groups

More...
OrthoDBi
140051at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.120.1880, 1 hit
1.25.40.450, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014908 Nucleoporin_Nup133/Nup155_N
IPR004870 Nucleoporin_Nup155
IPR042533 Nucleoporin_Nup155_C_1
IPR042538 Nucleoporin_Nup155_C_3

The PANTHER Classification System

More...
PANTHERi
PTHR10350 PTHR10350, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08801 Nucleoporin_N, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

F4HXV6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSQDDEIVMR DVTSAGICIG DRIGREAASQ LDLEEALEAS RYASHPYSTH
60 70 80 90 100
PREWPPLIEV GETWELPSVL IERYNTAGGE GTALCGIFPE IRRAWASVDN
110 120 130 140 150
SLFLWRFDKR DGQCPEYSGE EQAICAVGLA KCRPGVFVEA IQYLLVLATP
160 170 180 190 200
VELVLVGVCC TEGPDGRDPY AEISVQPLPD YTISSDGVTM TCVTCTNKGR
210 220 230 240 250
IFMAGRDGHI YELLYTTGSG WNKRCRKVCL TAGVGSMISR WVVPNVFKFG
260 270 280 290 300
AVDPVVEMVV DNERQILYAR TEEMKLQAYV SGPNGEGPLK KVAEERNLLN
310 320 330 340 350
QKDLSQGNRQ SAVAGRSNKP SIVSISPLSM LESKWLHLVA ALSDGRRMYL
360 370 380 390 400
STSSSGSGST ISFSGFNNHR QTPNCLKVVS TRPSPPLGVG VGLGFGAASV
410 420 430 440 450
AGRTQNDDLS MKIETAYYSV GTLVLSDSSP PAMSSLLVVS RDSSVHSQAG
460 470 480 490 500
SSSGPSSRSS RALREVVSSL PIEGRMLFVA DVLPSPDTAA TIQSLYSELE
510 520 530 540 550
YCGVEVSGES YEKACGKLWA RSDLSTQHIL PRRKIVVFTT MGMMELVFNR
560 570 580 590 600
PVDILRRLLE SNSPRSLLED FFTRFGVGEA AAMCLMLAAR IINFEDLISN
610 620 630 640 650
IVADKAAEAF EDPRIVGMPQ FDGSSGLSNT RTATGGFSMG QVVQEAEPIF
660 670 680 690 700
SGAHEGLCLC TSRLLFPLWE LPVMSKKTSS DTMSEDGVVI CRLSTSAMHV
710 720 730 740 750
LESKIRSLEK FLRSRRNQRR GLYGCVAGLG DVTGSILYGT GSELGATERN
760 770 780 790 800
MVRNLFGAYS NGGESANKRQ RLPYSPAELA ATEVRAMECI RQLLLRSAEA
810 820 830 840 850
LFLLQLLSQH HVARLVQELD ANLKQALVQL TFHQLVCSEE GDQIATRLIS
860 870 880 890 900
AVMEYYTGSD GRGTVDDISP RLREGCPSYF KESDYKFYLA VERLERAALT
910 920 930 940 950
SDAEEKENVA REAFSFLSKV PGSADLQTVC KRFEDLRFYE AVVCLPLQKA
960 970 980 990 1000
QALDPAGDAF NDQLDASIRE HALAQRKQCY EIIANALRSL ASPLASPTLD
1010 1020 1030 1040 1050
EASRSQYICQ IVHLGVQSTD RAFREYLYKA MIELHLENEL LEYGGPDLVP
1060 1070 1080 1090 1100
FLQNAGSHSE SQVGAVSTGS SPLGHSGTQI SSDQAKYFDL LAKYYVSKRQ
1110 1120 1130 1140 1150
HVLAAHVFLR LAERRAISLG DSPTLERRRD DLSQAVLQAK NASNSDGLVG
1160 1170 1180 1190 1200
SAQGVSDSGL LDLLEGKLAV LQFQIKIRDK LEAIASNFES SVAMQDSDQN
1210 1220 1230 1240 1250
GQVLDGDSSD DTNLANAANE MAMEVSSELK SVTQLYNEYA VPFELWEICL
1260 1270 1280 1290 1300
EMLYFANYSG DADSSIIRET WARLIDQALS QGGIREACAV LKRVGSHIYP
1310 1320 1330 1340 1350
GDGVVLPLDV LCLHLERAAL ERSERIENVR DEDIAKALLA ACKGAAEPVL
1360 1370 1380 1390 1400
NAYDRLLSNA AVVPSPNLRI RLLRSVLVVL REWAMSVLSD RMGSSPTRSS
1410 1420 1430 1440 1450
LILGGSFALE NKAALNQGAR DKIANAANRY MTEVRRLALP PNKTDGVYAG
1460
FKELDESLLS PFSF
Length:1,464
Mass (Da):160,014
Last modified:June 28, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5916954B5DBB88CB
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF79236 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC006917 Genomic DNA Translation: AAF79236.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29235.1

NCBI Reference Sequences

More...
RefSeqi
NP_172938.2, NM_101354.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G14850.1; AT1G14850.1; AT1G14850

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
838050

Gramene; a comparative resource for plants

More...
Gramenei
AT1G14850.1; AT1G14850.1; AT1G14850

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G14850

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006917 Genomic DNA Translation: AAF79236.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE29235.1
RefSeqiNP_172938.2, NM_101354.3

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGridi23290, 5 interactors
STRINGi3702.AT1G14850.1

PTM databases

iPTMnetiF4HXV6

Proteomic databases

PaxDbiF4HXV6
PRIDEiF4HXV6

Genome annotation databases

EnsemblPlantsiAT1G14850.1; AT1G14850.1; AT1G14850
GeneIDi838050
GrameneiAT1G14850.1; AT1G14850.1; AT1G14850
KEGGiath:AT1G14850

Organism-specific databases

AraportiAT1G14850
TAIRilocus:2006802 AT1G14850

Phylogenomic databases

eggNOGiKOG1900 Eukaryota
COG5308 LUCA
HOGENOMiHOG000084151
InParanoidiF4HXV6
KOiK14312
OMAiDYTHPNP
OrthoDBi140051at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:F4HXV6

Gene expression databases

ExpressionAtlasiF4HXV6 baseline and differential
GenevisibleiF4HXV6 AT

Family and domain databases

Gene3Di1.20.120.1880, 1 hit
1.25.40.450, 1 hit
InterProiView protein in InterPro
IPR014908 Nucleoporin_Nup133/Nup155_N
IPR004870 Nucleoporin_Nup155
IPR042533 Nucleoporin_Nup155_C_1
IPR042538 Nucleoporin_Nup155_C_3
PANTHERiPTHR10350 PTHR10350, 1 hit
PfamiView protein in Pfam
PF08801 Nucleoporin_N, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNU155_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F4HXV6
Secondary accession number(s): Q9LQU6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 26, 2014
Last sequence update: June 28, 2011
Last modified: October 16, 2019
This is version 64 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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