UniProtKB - F1RDM1 (F1RDM1_DANRE)
Protein
Submitted name:
Si:ch211-212o1.2
Gene
si:ch211-212o1.2
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
: fatty acid metabolism Pathwayi
This protein is involved in the pathway fatty acid metabolism, which is part of Lipid metabolism.ARBA annotationView all proteins of this organism that are known to be involved in the pathway fatty acid metabolism and in Lipid metabolism.
GO - Biological processi
- fatty acid metabolic process Source: UniProtKB-UniPathway
Enzyme and pathway databases
UniPathwayi | UPA00199 |
Names & Taxonomyi
Protein namesi | Submitted name: Si:ch211-212o1.2Imported |
Gene namesi | Name:si:ch211-212o1.2Imported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-041111-310, si:ch211-212o1.2 |
Subcellular locationi
Other locations
- Membrane ARBA annotation; Multi-pass membrane protein ARBA annotation
Other locations
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 70 – 89 | HelicalSequence analysisAdd BLAST | 20 | |
Transmembranei | 95 – 113 | HelicalSequence analysisAdd BLAST | 19 |
Keywords - Cellular componenti
MembraneExpressioni
Gene expression databases
Bgeei | ENSDARG00000011498, Expressed in mature ovarian follicle and 31 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 107 – 284 | TMEM189_B_dmainInterPro annotationAdd BLAST | 178 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 19 – 49 | DisorderedSequence analysisAdd BLAST | 31 |
Sequence similaritiesi
Belongs to the fatty acid desaturase CarF family.ARBA annotation
Keywords - Domaini
Transmembrane, Transmembrane helixSequence analysisARBA annotationPhylogenomic databases
eggNOGi | KOG3011, Eukaryota |
InParanoidi | F1RDM1 |
OMAi | RFQEWVC |
OrthoDBi | 1421561at2759 |
TreeFami | TF106147 |
Family and domain databases
InterProi | View protein in InterPro IPR019547, TMEM189_B_dmain |
Pfami | View protein in Pfam PF10520, TMEM189_B_dmain, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All
F1RDM1-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
FPAISSLVLA ASTSVTSPTE IRHRSMAEED PNGNEHGAAA RSTAPRWGPQ
60 70 80 90 100
HAGARQLAKL YSPGKRLQEW ICVILCLSLF IVNLSFLFLN FSTVHIYRII
110 120 130 140 150
FGIVTGIVTA DFASGMVHWG ADTWGSVEIP VIGKAFIRPF REHHIDPTAI
160 170 180 190 200
TRHDFIETNG DNCMITILPL AHMAYKFLSY PPDALAESYP WECFVFALAV
210 220 230 240 250
FVTMTNQIHK WAHSYFDLPR WVTLLQDCHL VLPRKHHRIH HVSPHETYYC
260 270 280 290
ITTGWLNYPL DRVGFWRTME WLIERLTGQR PRSDDLAWAK KTD
Computationally mapped potential isoform sequencesi
There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketQ1L946 | Q1L946_DANRE | Si:ch211-212o1.2 | si:ch211-212o1.2 | 283 | Annotation score: | ||
Q1L945 | Q1L945_DANRE | Si:ch211-212o1.2 | si:ch211-212o1.2 | 144 | Annotation score: | ||
A0A2R8PXX8 | A0A2R8PXX8_DANRE | Si:ch211-212o1.2 | si:ch211-212o1.2 | 265 | Annotation score: | ||
A0A2R8RI57 | A0A2R8RI57_DANRE | Si:ch211-212o1.2 | si:ch211-212o1.2 | 266 | Annotation score: | ||
A0A2R8RZ48 | A0A2R8RZ48_DANRE | Si:ch211-212o1.2 | si:ch211-212o1.2 | 324 | Annotation score: | ||
A0A2R8QN90 | A0A2R8QN90_DANRE | Si:ch211-212o1.2 | si:ch211-212o1.2 | 259 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR628362 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENSDART00000005027; ENSDARP00000004945; ENSDARG00000110768 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR628362 Genomic DNA No translation available. |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 7955.ENSDARP00000004945 |
Proteomic databases
PaxDbi | F1RDM1 |
Genome annotation databases
Ensembli | ENSDART00000005027; ENSDARP00000004945; ENSDARG00000110768 |
Organism-specific databases
ZFINi | ZDB-GENE-041111-310, si:ch211-212o1.2 |
Phylogenomic databases
eggNOGi | KOG3011, Eukaryota |
InParanoidi | F1RDM1 |
OMAi | RFQEWVC |
OrthoDBi | 1421561at2759 |
TreeFami | TF106147 |
Enzyme and pathway databases
UniPathwayi | UPA00199 |
Gene expression databases
Bgeei | ENSDARG00000011498, Expressed in mature ovarian follicle and 31 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR019547, TMEM189_B_dmain |
Pfami | View protein in Pfam PF10520, TMEM189_B_dmain, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F1RDM1_DANRE | |
Accessioni | F1RDM1Primary (citable) accession number: F1RDM1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 3, 2011 |
Last sequence update: | June 20, 2018 | |
Last modified: | April 7, 2021 | |
This is version 59 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |