UniProtKB - F1RAX6 (F1RAX6_DANRE)
Protein
Submitted name:
Pentraxin 4, long
Gene
ptx4
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
Caution
Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation
Names & Taxonomyi
Protein namesi | Submitted name: Pentraxin 4, longImported |
Gene namesi | Name:ptx4Imported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-120215-70, ptx4 |
Subcellular locationi
Other locations
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 34 – 52 | HelicalSequence analysisAdd BLAST | 19 |
Keywords - Cellular componenti
MembraneExpressioni
Gene expression databases
Bgeei | ENSDARG00000038072, Expressed in mature ovarian follicle and 21 other tissues |
Family & Domainsi
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 62 – 82 | Sequence analysisAdd BLAST | 21 | |
Coiled coili | 173 – 235 | Sequence analysisAdd BLAST | 63 |
Keywords - Domaini
Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysisPhylogenomic databases
eggNOGi | ENOG502QTID, Eukaryota |
GeneTreei | ENSGT01020000230534 |
HOGENOMi | CLU_044996_0_0_1 |
InParanoidi | F1RAX6 |
TreeFami | TF330208 |
Family and domain databases
InterProi | View protein in InterPro IPR013320, ConA-like_dom_sf IPR001759, Pentraxin-related |
Pfami | View protein in Pfam PF00354, Pentaxin, 1 hit |
PRINTSi | PR00895, PENTAXIN |
SMARTi | View protein in SMART SM00159, PTX, 1 hit |
SUPFAMi | SSF49899, SSF49899, 1 hit |
PROSITEi | View protein in PROSITE PS51828, PTX_2, 1 hit |
i Sequence
Sequence statusi: Complete.
F1RAX6-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEGRKSPKML AAEGSFCLLK TLFKGGKVTM TRQVGGSVFL LITVFLLMPM
60 70 80 90 100
SWTRRGVPAD TFKALNNRLR TLNQQFKRFQ QMTSTHLQRI GKNHNVTNNV
110 120 130 140 150
DFKFLSQQFE RISRELRSFR EMTEHSLNSL KSWTKSLQKK TNRLHSSLSN
160 170 180 190 200
MTRALWQNNH HNLREIHKQR AALTDLSHKI QKQQSQIDSL ESLKDQVQDG
210 220 230 240 250
MQDLQTSLKK HQTRIMKLES QIQELLKIIS TSKAEDPFNS IRKQHGVLMR
260 270 280 290 300
HVQTQPKSRE HRIRERLLLR STKQPQTTIR ERQWQSTTQP TVQAHEELFQ
310 320 330 340 350
LPLRHKIPHV QSPKEEAKIC NVGSMLLFPS TSTENYAIFQ KTFQTGIHEL
360 370 380 390 400
SICTWLKVDA KYVGTIFSYA TENNDNMLVL YGHNSGKLGL MDFVIGDPTY
410 420 430 440 450
RELPSQNILD GEWHHLCIIW SSIEGRFWYY LDRHLISNGS KFQKGYEIPP
460 470 480 490 500
GGFVVLGQEQ DSLGGDFDVA EAFVGRLAGF ALWTRTLSPV EVSGLADGKG
510 520 530
VPQGAVLSLD DVDQMSGSVQ HITCECLEHC V
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR394572 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENSDART00000055500; ENSDARP00000055499; ENSDARG00000038072 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR394572 Genomic DNA No translation available. |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 7955.ENSDARP00000055499 |
Proteomic databases
PaxDbi | F1RAX6 |
Genome annotation databases
Ensembli | ENSDART00000055500; ENSDARP00000055499; ENSDARG00000038072 |
Organism-specific databases
ZFINi | ZDB-GENE-120215-70, ptx4 |
Phylogenomic databases
eggNOGi | ENOG502QTID, Eukaryota |
GeneTreei | ENSGT01020000230534 |
HOGENOMi | CLU_044996_0_0_1 |
InParanoidi | F1RAX6 |
TreeFami | TF330208 |
Gene expression databases
Bgeei | ENSDARG00000038072, Expressed in mature ovarian follicle and 21 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR013320, ConA-like_dom_sf IPR001759, Pentraxin-related |
Pfami | View protein in Pfam PF00354, Pentaxin, 1 hit |
PRINTSi | PR00895, PENTAXIN |
SMARTi | View protein in SMART SM00159, PTX, 1 hit |
SUPFAMi | SSF49899, SSF49899, 1 hit |
PROSITEi | View protein in PROSITE PS51828, PTX_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F1RAX6_DANRE | |
Accessioni | F1RAX6Primary (citable) accession number: F1RAX6 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 3, 2011 |
Last sequence update: | July 11, 2012 | |
Last modified: | April 7, 2021 | |
This is version 61 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |