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UniProtKB - F1QXX9 (F1QXX9_DANRE)

Entry version 58 (07 Apr 2021)
Sequence version 3 (20 Jun 2018)
Previous versions | rss
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Protein
Submitted name:

Si:ch211-244a23.1

Gene

pkhd1l1.2

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Si:ch211-244a23.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pkhd1l1.2Imported
Synonyms:si:ch211-244a23.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7955 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000437 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 19

Organism-specific databases

Zebrafish Information Network genome database

More...ZFINi		ZDB-GENE-060503-789, pkhd1l1.2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei4164 – 4182HelicalSequence analysisAdd BLAST19

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 26Sequence analysisAdd BLAST26
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501533369527 – 4183Sequence analysisAdd BLAST4157

Keywords - PTMi

GlycoproteinARBA annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSDARG00000040004, Expressed in head and 12 other tissues

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini330 – 486PA14InterPro annotationAdd BLAST157
Domaini2140 – 2260G8InterPro annotationAdd BLAST121
Domaini2995 – 3132G8InterPro annotationAdd BLAST138

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

Ensembl GeneTree

More...GeneTreei		ENSGT00940000157594

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		F1QXX9

TreeFam database of animal gene trees

More...TreeFami		TF329582

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.160.20.10, 1 hit
2.60.40.10, 14 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR039448, Beta_helix
IPR008972, Cupredoxin
IPR019316, G8_domain
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR002909, IPT_dom
IPR037524, PA14/GLEYA
IPR006626, PbH1
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence

Pfam protein domain database

More...Pfami		View protein in Pfam
PF13229, Beta_helix, 1 hit
PF10162, G8, 2 hits
PF01833, TIG, 14 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01225, G8, 2 hits
SM00429, IPT, 12 hits
SM00710, PbH1, 10 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49503, SSF49503, 1 hit
SSF51126, SSF51126, 2 hits
SSF81296, SSF81296, 14 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51484, G8, 2 hits
PS51820, PA14, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

F1QXX9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRHLRLQLHL TLTVCILLSS AGLTEAQRVD KLMPKYGSLN GGTRLTIWGQ 
        60         70         80         90        100
GFAQASQFNL NANDPNLGNK VTLVSTTRSI TCDVDRDSSN SKQIMCYTRA 
       110        120        130        140        150
LPEDSYGVRV SVDGVPIPFS SICNGNTWDY WCIFYSRSFR TPTIQSISPL 
       160        170        180        190        200
SGPPGTVVTM RGRIFTNVYG SMSTSSNGLD VKLSRAYMGG MPCEFLKPNS 
       210        220        230        240        250
EEKYGLKLDN GEWGYMSCKM TGTYIGHHNF SYIVSGEYGR SLPDFGVFSI 
       260        270        280        290        300
SALNKLAMFQ TYAEVTGVSP SAGSMLGGTL LTIQGQNFDE TDQPAMVLVG 
       310        320        330        340        350
GHECQIRSIS NKKVVCVTPG YERKNVTVFP GGRGIKMETW DISNLNNLED 
       360        370        380        390        400
VLMYSSNMSG YSVQWVDSLS YVWPNGFHSF VARLSGFFAP LESDNYYFRI 
       410        420        430        440        450
KSVGRSQLYF SKTGLPQDKV MIASQPYYYY YTSFYGLSSQ KSEVMRLEKL 
       460        470        480        490        500
KPYYIEVLVH GYSGSASVDV GFFKEISPFT AQQAVEAVNE KQQINAYYDV 
       510        520        530        540        550
LPEKQVVHFK GWKPTSAIRE VQILRISSAC FSLNTCELTY YQLAYGNLTT 
       560        570        580        590        600
GPILVSASAM DLQNALNDLW TIKPDNVTVT KQELDTESVY NVTFNSKRGD 
       610        620        630        640        650
FEDLDYQIID TDLNITVTEA VKGRASMETF TLLWAGVSSL PLPFNASEAE 
       660        670        680        690        700
VYSALDLMIT AKCPAEIPSS ENSNVKFFRD YETASTGFSG DLSRRGVQVS 
       710        720        730        740        750
DSEAFCGRWS LKNPEIIFSF HDTTASGAIY SPILLQTYAT VSLCLAYKGQ 
       760        770        780        790        800
LRNELGILFS YETADTNREE NIRVSVSFDS TEKWNYQCVD LLEYIQAKFE 
       810        820        830        840        850
GSKYKLLQLS VYGAADYFID AVHIGRSALD PYVIVHRRRP PALASSGLFL 
       860        870        880        890        900
SNIAVSKQTN ASQISYEITA TPYNCGFDVP LLEIGFLQKM PNSTVDLLIQ 
       910        920        930        940        950
SQGNATVTVM RPQKASPPLT GTFDVEVFGR RVEGLTIDIS AADLQYALQG 
       960        970        980        990       1000
IPELGQLQVQ RSGNCRGYTW NIQWLTIPGN QSLIKINASN VIGVNPSVTS 
      1010       1020       1030       1040       1050
QEVEKGGLFK QKIMGDFLRV PSNKPQVQVF INGIPSWCSG DCGFTWNDLK 
      1060       1070       1080       1090       1100
TPTVTGISPT EGSSSLGTVL TITGSGFDGG NVTVKTGDVE CSILQVTTSI 
      1110       1120       1130       1140       1150
TCQVGPASAG VQPVSLSFSV LGNARYQNNT SFNFTHLLGV TSINPTTGSV 
      1160       1170       1180       1190       1200
AGGTVLTVSG YGFSNNIDVI IGSQPCNIVE VELFQLRCIV PAGSEGDQTV 
      1210       1220       1230       1240       1250
TIGAGEMTAI FNDSFTYSNT LTALITSVSP QTTTVFGDRI LTILGMHFGE 
      1260       1270       1280       1290       1300
EPNGSSVLIG DAECELLQWT NDSISCQLPT LPPAVYSVNI RVANQGYPLT 
      1310       1320       1330       1340       1350
SPDINTTIEY VLEVTGFSPS VGSLYGGTTI TIIGSGFSLD IQDNTVTLGD 
      1360       1370       1380       1390       1400
TQCRVIAASD NELELYGQGY AWSPSALITS VGDTVVWRWD APAFVPGLGY 
      1410       1420       1430       1440       1450
RVFSVSNPSS TDYDGISFSS GDRQTAKGFF AYRFTSPGVY YYSSGYIDSA 
      1460       1470       1480       1490       1500
NEKTLQGVVT VMPLEESTVE LQVFVTGIKA LVNLGQINSS EPECVATSDC 
      1510       1520       1530       1540       1550
FQDQQEFNDT SDGLYFTFTS CATPTVYDIT PGHGTTHDII NIRGSGFSNI 
      1560       1570       1580       1590       1600
TCANEVKVGD LPCSVINSSS TEINCQLSPD SGAPVGVPLP ITVQINNLGN 
      1610       1620       1630       1640       1650
GLLTMPKEID RRFVVLPVVD SIFPVVGSTT GSTRLLISGS GFFSGSVMVA 
      1660       1670       1680       1690       1700
NIPCNVVSFD YSQIVCDTSP SVARSGDVTV YINSISSSCS SDCTFEYSDS 
      1710       1720       1730       1740       1750
ITPQVSTVSP NSVNGNSTTV TVTGRGFGNN SADLMISADN ILLAVTEVND 
      1760       1770       1780       1790       1800
SSIQVLVGAL PAGTYNLTVV VMSKGLATGS ATLTSIAQAS INPTSGSIAG 
      1810       1820       1830       1840       1850
GTPLLITGNG FVAGNTTVKL GNSLCKILDV TADTVRCLTP PRAEGQVQVN 
      1860       1870       1880       1890       1900
IKVFDVVYPP QNFNYSRQQT PNITSVTPKT GPVGTQITIS GSGFGTDSAV 
      1910       1920       1930       1940       1950
VSLQIDSVAC NISSITDTQL LCTVGEHAGG TFPVMFNHQV KGYALTQSVF 
      1960       1970       1980       1990       2000
KYELLLTGIT PNEGSYAGGA VVAIQGSGFD PNITKVLICN RECTVHLQDS 
      2010       2020       2030       2040       2050
TSTQLNCEVP PNNGISEALR TCTVMVMNGG DSVNLTSGYT YRSSLTPVIT 
      2060       2070       2080       2090       2100
NITPRRGGTA GGTRLTITGS GFSSNFSEIG VTIAGSVCDI QSANETQIIC 
      2110       2120       2130       2140       2150
VTNAGPKSQE TQVRVQQGNR GIARMDNASF FYIDVWSSPY TWGGLSPPEE 
      2160       2170       2180       2190       2200
GMMVVITAGQ TILLDTSTPV LKMLLIQGGR LIFDEADIEL QAENILITDG 
      2210       2220       2230       2240       2250
GALQIGTEQM PFQHKAIITL HGHLRSQELP VYGTKTLGVR QGVLDLHGIP 
      2260       2270       2280       2290       2300
VPVPWTRLSQ TAQNGSSTLT LMHAVTWKTG DEIVIASTGN RRSQRENELR 
      2310       2320       2330       2340       2350
RIASVSADGR TLTLTEPLTY THLGVSVTLP DGMIFEARAE VGLLTRNIVV 
      2360       2370       2380       2390       2400
RGSNNAEWND QIPACPDGFD PGEFATQTCF QGRFGEEVGS DQFGGCIMFH 
      2410       2420       2430       2440       2450
APQPNQNLAI GRIEYVELFN VGQAFRLERY PIHWHLMGDV HFKSYVRGCS 
      2460       2470       2480       2490       2500
IHQSYNRAVS IHSTHNLLVE QNVIYNIMGG AFFIEDGIET GNILQYNLAV 
      2510       2520       2530       2540       2550
FVKQSTSLQN EDITPAAFWI TNPNNTIRHN AVAGGTHFGF WYRMPDDFND 
      2560       2570       2580       2590       2600
PIYDAYICPK RVPLGQFFNN TVHSQGWFGL WIFQDFFPME TGSCSYSTPT 
      2610       2620       2630       2640       2650
PAVFRRLTSW NNEKGAEWVN VGSVQFSEFL MVNNEKAGVE AKRIIWHYVS 
      2660       2670       2680       2690       2700
GWGLDGGAAV VNSTMVGHVD ELGLGSDYCT NRGIVLPLDD GMSVINTTFV 
      2710       2720       2730       2740       2750
NFNRSSCAAV SLAEIAESCS PRCGGWSARF SGIKFYHSPN KAWLRWEHEV 
      2760       2770       2780       2790       2800
ALVDIDGSLT GNVSNKVVPK NNLLDPRHCF PATEWSIGIP AAVCDNTINF 
      2810       2820       2830       2840       2850
HRMVIYYPSY TLWAKDVILT NSYGSSVLPF LYTFMTHSYG WMAMLPTGQT 
      2860       2870       2880       2890       2900
YNWLFNGASQ ITSISYYGMV YSFRPENYVI INHNMTQTPD MVHIIDYRSG 
      2910       2920       2930       2940       2950
SPEPLNSTVN VNGDWYINQS SNSLYYMVSG RDRVSSRRKR NSVDRSLIDR 
      2960       2970       2980       2990       3000
YLVFNVYQCY YPKCIAPTFT PSPEVSFGPD TLQTPANFTR WSNTSFWRSS 
      3010       3020       3030       3040       3050
PENNFNVPQE GSDVIIPAYV WMVVDVVVPS LNKLKIAGVL EIPDTNNDTS 
      3060       3070       3080       3090       3100
IMQYNNVVLN ATYISIQGGR LIAGWPNEPF RGQLQIILRG SHTTPDWLLP 
      3110       3120       3130       3140       3150
YGTNQGSKVL GVFGSLDLYG MPHNVYHTKL ASTSQAGNST LSLQESVDWK 
      3160       3170       3180       3190       3200
AGDKILLSTT SYDPWQTEIR TIAAVSDYGR TLTLDQPLTY THIGESYSVP 
      3210       3220       3230       3240       3250
GTSRSYQLAG NVALLTRNIQ IIGQEYPDMF TESYGARVLV GTFSGFRGKA 
      3260       3270       3280       3290       3300
QIRNVQFYHT GQEGWNDLSD PRYSLVFLNL GWVAGESYIS GCSFHDGFAP 
      3310       3320       3330       3340       3350
AIGIFGTDGL SIDDNVIHHT VGEGISVKGD SNVIQRNLVT LTLWPGSYNG 
      3360       3370       3380       3390       3400
RAEDFNFQWN AAIEVNEATN VTLKGNIVAG YERVGFRIDG EPCPGFSESE 
      3410       3420       3430       3440       3450
AQWSQNEAHG GLYGLYMNRD GLPGCSQIQG FTVWRSFDFG IYVQVSMNVL 
      3460       3470       3480       3490       3500
ISNVTLIDNG MGIMSLIYNP PSISHMYADK SVRVQGALIV GNSPNFNCLD 
      3510       3520       3530       3540       3550
SLSTTMTFVS LSRSHRAPRP PSGGRSGVCW PTFESYHNSG PQNLLTGLTS 
      3560       3570       3580       3590       3600
YSAIAGLMTI SDTTFIGFQN VCSTERNYMF MTNPGNEDLQ HPISVERITM 
      3610       3620       3630       3640       3650
INSTEDSLAF IHRPDLSKVN PSDCVDMDCD AKKKTMLKDL DGSFLGAVGA 
      3660       3670       3680       3690       3700
VVPQSEYEWN GNPRHGLGDY RIPKVMLTYL NGSRIPVNQI SPYKGVIRSN 
      3710       3720       3730       3740       3750
CTYMSTWQSY KCFGLNYKML VIESLDTDTE TRRLSPVAIL GDKYVDLING 
      3760       3770       3780       3790       3800
PQDHSWCSGY TCRKRISLFH AIVATNKSFD IYFTSTTPQK LRLMLLNAGP 
      3810       3820       3830       3840       3850
TESVRVAVFY SNPQRLDVYV NNSLVGPTNA QWNVDKTDYT LLEPTYTGQY 
      3860       3870       3880       3890       3900
FPSFNASHGS NFLDQDYKMM NILLRGSDPV QIRTSPVLFV AFNLPAMTEA 
      3910       3920       3930       3940       3950
EFFGPNLINN LAAFLKIPPY KIRITKIIRE GTNARRRRST GLTVQVEIRE 
      3960       3970       3980       3990       4000
PPAQTTTNST TDNTQQFDVL KNIADDLGRA AVSGNLSQSI GFNVSSMGII 
      4010       4020       4030       4040       4050
PPPPSSSDPA WNNVATQEVT RADQQVETVK TVSSLKVVVQ PQAGSSLGPL 
      4060       4070       4080       4090       4100
SVQPSIMALD SAGDCVSVGV TSLTLSAVLK DANGNLVNGL YGNTTIPFSV 
      4110       4120       4130       4140       4150
CWANYTDLAI NTSCGSCQNL KLVFTLTQWN AESRSFTLRS PTTPSSVGNG 
      4160       4170       4180 
FPNIFGSSPA ISTMSVYLLI LFSALLLLLQ CYE
Length:4,183
Mass (Da):456,533
Last modified:June 20, 2018 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD55E6A82E8D24DC3
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A8E7R5A8E7R5_DANRE
Si:ch211-244a23.1
pkhd1l1.2 si:ch211-244a23.1
3,895Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
I3IS60I3IS60_DANRE
Si:ch211-244a23.1
pkhd1l1.2 si:ch211-244a23.1
4,198Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
BX649562 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSDART00000124987; ENSDARP00000105859; ENSDARG00000040004

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX649562 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsembliENSDART00000124987; ENSDARP00000105859; ENSDARG00000040004

Organism-specific databases

ZFINiZDB-GENE-060503-789, pkhd1l1.2

Phylogenomic databases

GeneTreeiENSGT00940000157594
InParanoidiF1QXX9
TreeFamiTF329582

Gene expression databases

BgeeiENSDARG00000040004, Expressed in head and 12 other tissues

Family and domain databases

Gene3Di2.160.20.10, 1 hit
2.60.40.10, 14 hits
InterProiView protein in InterPro
IPR039448, Beta_helix
IPR008972, Cupredoxin
IPR019316, G8_domain
IPR013783, Ig-like_fold
IPR014756, Ig_E-set
IPR002909, IPT_dom
IPR037524, PA14/GLEYA
IPR006626, PbH1
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF13229, Beta_helix, 1 hit
PF10162, G8, 2 hits
PF01833, TIG, 14 hits
SMARTiView protein in SMART
SM01225, G8, 2 hits
SM00429, IPT, 12 hits
SM00710, PbH1, 10 hits
SUPFAMiSSF49503, SSF49503, 1 hit
SSF51126, SSF51126, 2 hits
SSF81296, SSF81296, 14 hits
PROSITEiView protein in PROSITE
PS51484, G8, 2 hits
PS51820, PA14, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF1QXX9_DANRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F1QXX9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: June 20, 2018
Last modified: April 7, 2021
This is version 58 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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